Factsheet for TraesCS7B01G324000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G587700.1	Wheat	cytosol, plastid	90.38	87.85
TraesCS3A01G379600.1	Wheat	cytosol	88.46	85.19
TraesCS3B01G505000.1	Wheat	golgi	87.5	80.53
TraesCS7B01G281500.1	Wheat	cytosol	86.54	79.65
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	90.38	63.95
TraesCS1B01G380800.1	Wheat	golgi	89.42	63.27
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	72.12	56.39
TraesCS3B01G284300.1	Wheat	cytosol	72.12	52.45
KXG22440	Sorghum	cytosol	71.15	50.68
Zm00001d009417_P006	Maize	cytosol	71.15	50.34
CDX91669	Canola	mitochondrion	29.81	47.69
KRH45415	Soybean	mitochondrion	29.81	44.29
VIT_09s0002g02560.t01	Wine grape	cytosol	62.5	43.62
Solyc03g121330.2.1	Tomato	nucleus	59.62	43.36
PGSC0003DMT400006681	Potato	extracellular	59.62	43.36
CDY30215	Canola	cytosol	59.62	43.36
Bra011106.1-P	Field mustard	cytosol	59.62	43.36
KRH47170	Soybean	endoplasmic reticulum	62.5	43.33
KRH44206	Soybean	nucleus	62.5	43.33
CDY14213	Canola	cytosol	58.65	42.66
PGSC0003DMT400016607	Potato	cytosol	58.65	42.66
PGSC0003DMT400012339	Potato	cytosol	58.65	42.66
Bra010329.1-P	Field mustard	cytosol	58.65	42.66
Bra024145.1-P	Field mustard	cytosol	58.65	42.66
CDY62032	Canola	cytosol	58.65	42.66
GSMUA_Achr1P05120_001	Banana	cytosol	60.58	42.57
Bra039014.1-P	Field mustard	cytosol	57.69	41.96
CDY35881	Canola	cytosol	57.69	41.96
AT4G29410.1	Thale cress	cytosol	57.69	41.96
Os02t0821200-01	Rice	plastid	36.54	41.3
CDX82715	Canola	cytosol	56.73	41.26
AT2G19730.2	Thale cress	cytosol	56.73	41.26
Bra036710.1-P	Field mustard	cytosol	56.73	41.26
KRH23342	Soybean	endoplasmic reticulum	58.65	40.67
KRH09991	Soybean	cytosol, endoplasmic reticulum	58.65	40.67
CDX81940	Canola	cytosol	55.77	40.56
Bra031093.1-P	Field mustard	cytosol	55.77	40.56
VIT_04s0008g00790.t01	Wine grape	cytosol	55.77	40.28
CDY21652	Canola	cytosol	54.81	39.86
CDY06809	Canola	extracellular	60.58	37.06
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	67.31	37.04
CDY43499	Canola	mitochondrion	60.58	36.42
GSMUA_Achr5P09610_001	Banana	plasma membrane	63.46	35.87
CDY03348	Canola	plastid	56.73	33.71
GSMUA_Achr6P33480_001	Banana	nucleus	60.58	31.82
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	33.65	29.41
CDY48720	Canola	cytosol	56.73	29.06
GSMUA_Achr1P28120_001	Banana	mitochondrion	62.5	28.02
Bra001548.1-P	Field mustard	nucleus	31.73	27.73
CDY47764	Canola	cytosol	40.38	21.43
Solyc12g044720.1.1	Tomato	nucleus	9.62	18.52
CDY41134	Canola	cytosol	8.65	15.0
Bra033205.1-P	Field mustard	cytosol	8.65	15.0

Protein Annotations

EnsemblPlants:TraesCS7B01G324000.1	EnsemblPlantsGene:TraesCS7B01G324000	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L28e/Mak16
InterPro:Ribosomal_L28e	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	PFAM:PF01778	MapMan:17.1.2.1.29	:

Description

No Description!

Coordinates

chr7B:-:575975834..575977310

Molecular Weight (calculated)

11945.5 Da

IEP (calculated)

11.409

GRAVY (calculated)

-0.739

Length

104 amino acids

Sequence
(BLAST)

001: MTTVRGFVVW ELVKKNNCFL IKQFRNSNAK LRFSKESNNL YNVNSYKFSS LANSKTVAVQ PSAGEDKAVV RSTTKTKKQN TPAKLQHKTL MRKEFRKMAK
101: SVKN

Best Arabidopsis Sequence Match ( AT4G29410.1 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.