Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033205.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| Solyc12g044720.1.1 | Tomato | nucleus | 60.0 | 66.67 |
| Os02t0821200-01 | Rice | plastid | 53.33 | 34.78 |
| CDY14213 | Canola | cytosol | 78.33 | 32.87 |
| CDY62032 | Canola | cytosol | 76.67 | 32.17 |
| CDY30215 | Canola | cytosol | 76.67 | 32.17 |
| AT4G29410.1 | Thale cress | cytosol | 73.33 | 30.77 |
| CDX81940 | Canola | cytosol | 73.33 | 30.77 |
| CDY21652 | Canola | cytosol | 73.33 | 30.77 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 60.0 | 30.25 |
| CDX82715 | Canola | cytosol | 70.0 | 29.37 |
| CDY35881 | Canola | cytosol | 70.0 | 29.37 |
| CDY06809 | Canola | extracellular | 78.33 | 27.65 |
| CDY43499 | Canola | mitochondrion | 78.33 | 27.17 |
| Solyc03g121330.2.1 | Tomato | nucleus | 63.33 | 26.57 |
| PGSC0003DMT400012339 | Potato | cytosol | 63.33 | 26.57 |
| PGSC0003DMT400006681 | Potato | extracellular | 61.67 | 25.87 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 63.33 | 25.33 |
| PGSC0003DMT400016607 | Potato | cytosol | 60.0 | 25.17 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 60.0 | 25.0 |
| KRH23342 | Soybean | endoplasmic reticulum | 61.67 | 24.67 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 60.0 | 24.16 |
| CDY03348 | Canola | plastid | 70.0 | 24.0 |
| KRH47170 | Soybean | endoplasmic reticulum | 60.0 | 24.0 |
| KRH44206 | Soybean | nucleus | 58.33 | 23.33 |
| Os01t0706500-00 | Rice | plastid | 55.0 | 22.76 |
| EES01347 | Sorghum | cytosol | 55.0 | 22.76 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 53.33 | 22.38 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 53.33 | 22.38 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 53.33 | 22.38 |
| KXG22440 | Sorghum | cytosol | 53.33 | 21.92 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 51.67 | 21.68 |
| Zm00001d009417_P006 | Maize | cytosol | 51.67 | 21.09 |
| CDY48720 | Canola | cytosol | 70.0 | 20.69 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 50.0 | 20.41 |
| TraesCS1B01G380800.1 | Wheat | golgi | 50.0 | 20.41 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 50.0 | 20.41 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 50.0 | 20.27 |
| CDY47764 | Canola | cytosol | 63.33 | 19.39 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 53.33 | 16.93 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 51.67 | 16.85 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 50.0 | 15.23 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 50.0 | 15.15 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 56.67 | 14.66 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 23.33 | 10.53 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 16.67 | 8.85 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 15.0 | 8.65 |
| TraesCS7B01G324000.1 | Wheat | plastid | 15.0 | 8.65 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 15.0 | 8.41 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 15.0 | 8.33 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 15.0 | 8.33 |
| TraesCS3B01G505000.1 | Wheat | golgi | 15.0 | 7.96 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 18.33 | 6.32 |
| CDX91669 | Canola | mitochondrion | 6.67 | 6.15 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 16.67 | 5.75 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 15.0 | 5.14 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 13.33 | 3.69 |
| KRH45415 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:A0A078HUW0 | UniProt:A0A078HUW0 | EnsemblPlants:CDY41134 | ProteinID:CDY41134 |
| ProteinID:CDY41134.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00072524001 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 |
| InterPro:Ribosomal_L28e | UniParc:UPI00025457B1 | : | : | : | : |
Description
BnaA02g23560DBnaA02g23560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HUW0]
Coordinates
chrLK032491:+:248285..249247
Molecular Weight (calculated)
6926.6 Da
IEP (calculated)
11.568
GRAVY (calculated)
-0.718
Length
60 amino acids
Sequence
(BLAST)
(BLAST)
1: MFNKFVLNKE FSRMAKAVAN QTVDNYYKPD LKKTALARRS VISKGLRVAK SHPKKRNMQA
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.