Factsheet for Os01t0706500-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01347	Sorghum	cytosol	93.79	93.79
TraesCS3D01G253300.1	Wheat	cytosol	86.9	88.11
TraesCS3B01G284300.1	Wheat	cytosol	86.9	88.11
HORVU3Hr1G066430.1	Barley	cytosol	86.9	88.11
TraesCS3A01G252700.1	Wheat	cytosol, golgi	86.21	87.41
Os02t0821200-01	Rice	plastid	54.48	85.87
Solyc12g044720.1.1	Tomato	nucleus	29.66	79.63
PGSC0003DMT400012339	Potato	cytosol	73.79	74.83
PGSC0003DMT400006681	Potato	extracellular	73.1	74.13
Solyc03g121330.2.1	Tomato	nucleus	72.41	73.43
VIT_09s0002g02560.t01	Wine grape	cytosol	75.17	73.15
GSMUA_Achr1P05120_001	Banana	cytosol	74.48	72.97
VIT_04s0008g00790.t01	Wine grape	cytosol	71.72	72.22
PGSC0003DMT400016607	Potato	cytosol	71.03	72.03
KRH47170	Soybean	endoplasmic reticulum	73.79	71.33
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	64.83	70.68
KRH44206	Soybean	nucleus	73.1	70.67
KRH09991	Soybean	cytosol, endoplasmic reticulum	73.1	70.67
AT2G19730.2	Thale cress	cytosol	68.28	69.23
Bra011106.1-P	Field mustard	cytosol	68.28	69.23
Bra010329.1-P	Field mustard	cytosol	68.28	69.23
CDY14213	Canola	cytosol	68.28	69.23
KRH23342	Soybean	endoplasmic reticulum	71.03	68.67
Bra024145.1-P	Field mustard	cytosol	67.59	68.53
Bra031093.1-P	Field mustard	cytosol	67.59	68.53
CDY62032	Canola	cytosol	67.59	68.53
CDX81940	Canola	cytosol	67.59	68.53
CDY30215	Canola	cytosol	67.59	68.53
CDY21652	Canola	cytosol	67.59	68.53
Bra036710.1-P	Field mustard	cytosol	67.59	68.53
CDX82715	Canola	cytosol	67.59	68.53
AT4G29410.1	Thale cress	cytosol	66.9	67.83
Bra039014.1-P	Field mustard	cytosol	66.9	67.83
CDY35881	Canola	cytosol	66.9	67.83
GSMUA_Achr5P09610_001	Banana	plasma membrane	76.55	60.33
KRH45415	Soybean	mitochondrion	28.97	60.0
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	48.28	58.82
CDY06809	Canola	extracellular	68.97	58.82
CDY43499	Canola	mitochondrion	68.97	57.8
CDY03348	Canola	plastid	67.59	56.0
Bra033205.1-P	Field mustard	cytosol	22.76	55.0
CDY41134	Canola	cytosol	22.76	55.0
GSMUA_Achr6P33480_001	Banana	nucleus	73.79	54.04
GSMUA_Achr1P28120_001	Banana	mitochondrion	77.24	48.28
CDY48720	Canola	cytosol	67.59	48.28
CDX91669	Canola	mitochondrion	21.38	47.69
CDY47764	Canola	cytosol	55.17	40.82
Bra001548.1-P	Field mustard	nucleus	26.9	32.77

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	EntrezGene:4327674	ProteinID:BAF05931.1	ProteinID:BAS73944.1	ProteinID:EAZ13264.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:L28e/Mak16	EnsemblPlantsGene:Os01g0706500
EnsemblPlants:Os01t0706500-00	PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	UniProt:Q0JJZ7	InterPro:Ribosomal_L28e
UniParc:UPI000009DD8E	RefSeq:XP_015621869.1	:	:	:	:

Description

Ribosomal protein L28e domain containing protein. (Os01t0706500-00)

Coordinates

chr1:+:29314194..29316850

Molecular Weight (calculated)

16283.7 Da

IEP (calculated)

11.000

GRAVY (calculated)

-0.739

Length

145 amino acids

Sequence
(BLAST)

001: MATIPDSLVW ELVKKNNSFL VKQFGNGNAK VQFSKEPNNL YNVHSYKHSG LANKKTVTVQ PASGKETAVV LSTTKTEKQN KPASLYHKSV MRKEFRKMAK
101: AVKNQVSDNY YRPDLTKPAL ARLSAVYRSL QVAKSGVKKK NRQAN

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.