Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14213 | Canola | cytosol | 100.0 | 100.0 |
| Bra024145.1-P | Field mustard | cytosol | 99.3 | 99.3 |
| Bra011106.1-P | Field mustard | cytosol | 96.5 | 96.5 |
| Bra031093.1-P | Field mustard | cytosol | 90.91 | 90.91 |
| AT4G29410.1 | Thale cress | cytosol | 90.21 | 90.21 |
| Bra036710.1-P | Field mustard | cytosol | 90.21 | 90.21 |
| Bra039014.1-P | Field mustard | cytosol | 89.51 | 89.51 |
| Bra033205.1-P | Field mustard | cytosol | 32.87 | 78.33 |
| Solyc12g044720.1.1 | Tomato | nucleus | 29.37 | 77.78 |
| PGSC0003DMT400016607 | Potato | cytosol | 75.52 | 75.52 |
| PGSC0003DMT400012339 | Potato | cytosol | 74.83 | 74.83 |
| PGSC0003DMT400006681 | Potato | extracellular | 74.83 | 74.83 |
| Solyc03g121330.2.1 | Tomato | nucleus | 74.13 | 74.13 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 72.73 | 72.22 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 72.73 | 69.8 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 72.73 | 69.33 |
| KRH47170 | Soybean | endoplasmic reticulum | 72.73 | 69.33 |
| KRH23342 | Soybean | endoplasmic reticulum | 72.03 | 68.67 |
| KRH44206 | Soybean | nucleus | 72.03 | 68.67 |
| Os01t0706500-00 | Rice | plastid | 69.23 | 68.28 |
| EES01347 | Sorghum | cytosol | 69.23 | 68.28 |
| KXG22440 | Sorghum | cytosol | 67.83 | 66.44 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 66.43 | 66.43 |
| TraesCS3B01G284300.1 | Wheat | cytosol | 66.43 | 66.43 |
| HORVU3Hr1G066430.1 | Barley | cytosol | 66.43 | 66.43 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 66.43 | 66.43 |
| Zm00001d009417_P006 | Maize | cytosol | 67.13 | 65.31 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 67.13 | 64.86 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 64.34 | 62.59 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 64.34 | 62.59 |
| TraesCS1B01G380800.1 | Wheat | golgi | 63.64 | 61.9 |
| Os02t0821200-01 | Rice | plastid | 39.16 | 60.87 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 45.45 | 60.75 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 48.95 | 58.82 |
| TraesCS7B01G324000.1 | Wheat | plastid | 42.66 | 58.65 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 42.66 | 58.65 |
| TraesCS3A01G379600.1 | Wheat | cytosol | 44.06 | 58.33 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 53.85 | 57.89 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 42.66 | 56.48 |
| TraesCS3B01G505000.1 | Wheat | golgi | 44.06 | 55.75 |
| KRH45415 | Soybean | mitochondrion | 27.27 | 55.71 |
| TraesCS7B01G281500.1 | Wheat | cytosol | 43.36 | 54.87 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 69.23 | 53.8 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 67.13 | 50.79 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 66.43 | 47.98 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 64.34 | 46.7 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 69.93 | 43.1 |
| Bra001548.1-P | Field mustard | nucleus | 34.97 | 42.02 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 46.85 | 38.51 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 45.45 | 37.36 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 44.76 | 36.57 |
| TraesCS6A01G220700.1 | Wheat | cytosol | 25.87 | 17.05 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | EnsemblPlantsGene:Bra010329 | EnsemblPlants:Bra010329.1 | EnsemblPlants:Bra010329.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:L28e/Mak16 | UniProt:M4D1H9 | PFAM:PF01778 | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 |
| InterPro:Ribosomal_L28e | UniParc:UPI00025472AC | : | : | : | : |
Description
AT4G29410 (E=1e-070) | 60S ribosomal protein L28 (RPL28C)
Coordinates
chrA08:+:13895161..13896310
Molecular Weight (calculated)
15997.7 Da
IEP (calculated)
11.390
GRAVY (calculated)
-0.625
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTVPGQLVW EIVKRNNCFL VKQFGRGNAK VQFSKETNNL CNLNSYKHSG LANKKTVTIQ VADKEQGVVL GTTKTKKQNK PKLSVNKSVL KKEFPRMAKA
101: VANQVVDNYY RPDLKKAALA RLSVISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSVISKGLR VAKSGPKRRN RQA
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.