Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- peroxisome 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 99.32 | 99.32 |
| TraesCS1B01G380800.1 | Wheat | golgi | 99.32 | 99.32 |
| TraesCS2D01G587700.1 | Wheat | cytosol, plastid | 68.71 | 94.39 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 64.63 | 91.35 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 80.95 | 83.22 |
| Os02t0821200-01 | Rice | plastid | 51.7 | 82.61 |
| KXG22440 | Sorghum | cytosol | 80.27 | 80.82 |
| Zm00001d009417_P006 | Maize | cytosol | 79.59 | 79.59 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 100.0 | 74.62 |
| Solyc12g044720.1.1 | Tomato | nucleus | 26.53 | 72.22 |
| PGSC0003DMT400006681 | Potato | extracellular | 67.35 | 69.23 |
| Solyc03g121330.2.1 | Tomato | nucleus | 67.35 | 69.23 |
| PGSC0003DMT400016607 | Potato | cytosol | 66.67 | 68.53 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 61.22 | 67.67 |
| PGSC0003DMT400012339 | Potato | cytosol | 65.31 | 67.13 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 68.03 | 67.11 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 67.35 | 66.89 |
| KRH47170 | Soybean | endoplasmic reticulum | 66.67 | 65.33 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 66.67 | 65.33 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 63.95 | 65.28 |
| AT2G19730.2 | Thale cress | cytosol | 63.27 | 65.03 |
| KRH44206 | Soybean | nucleus | 65.99 | 64.67 |
| KRH23342 | Soybean | endoplasmic reticulum | 65.99 | 64.67 |
| Bra024145.1-P | Field mustard | cytosol | 62.59 | 64.34 |
| Bra010329.1-P | Field mustard | cytosol | 62.59 | 64.34 |
| Bra011106.1-P | Field mustard | cytosol | 62.59 | 64.34 |
| CDY14213 | Canola | cytosol | 62.59 | 64.34 |
| CDY62032 | Canola | cytosol | 61.9 | 63.64 |
| Bra039014.1-P | Field mustard | cytosol | 61.9 | 63.64 |
| CDY35881 | Canola | cytosol | 61.9 | 63.64 |
| CDY30215 | Canola | cytosol | 61.9 | 63.64 |
| AT4G29410.1 | Thale cress | cytosol | 61.9 | 63.64 |
| Bra031093.1-P | Field mustard | cytosol | 61.22 | 62.94 |
| Bra036710.1-P | Field mustard | cytosol | 61.22 | 62.94 |
| CDX81940 | Canola | cytosol | 61.22 | 62.94 |
| CDX82715 | Canola | cytosol | 61.22 | 62.94 |
| CDY21652 | Canola | cytosol | 60.54 | 62.24 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 76.87 | 59.79 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 68.03 | 57.47 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 68.03 | 57.47 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 70.75 | 56.52 |
| CDY06809 | Canola | extracellular | 63.27 | 54.71 |
| CDY43499 | Canola | mitochondrion | 63.27 | 53.76 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 42.18 | 52.1 |
| CDY03348 | Canola | plastid | 61.22 | 51.43 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 68.03 | 50.51 |
| KRH45415 | Soybean | mitochondrion | 23.81 | 50.0 |
| CDY41134 | Canola | cytosol | 20.41 | 50.0 |
| Bra033205.1-P | Field mustard | cytosol | 20.41 | 50.0 |
| CDX91669 | Canola | mitochondrion | 21.77 | 49.23 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 70.07 | 44.4 |
| CDY48720 | Canola | cytosol | 61.22 | 44.34 |
| CDY47764 | Canola | cytosol | 48.3 | 36.22 |
| Bra001548.1-P | Field mustard | nucleus | 25.85 | 31.93 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G368700.1 | EnsemblPlantsGene:TraesCS1D01G368700 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L28e/Mak16 |
| InterPro:Ribosomal_L28e | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | PFAM:PF01778 | MapMan:17.1.2.1.29 | : |
Description
No Description!
Coordinates
chr1D:-:447923454..447925415
Molecular Weight (calculated)
16577.2 Da
IEP (calculated)
11.020
GRAVY (calculated)
-0.680
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTVPGSLVW ELVKKNNCFL IKQFGNSNAK VQFSKEPNNL YNVHSYKFSG LANSKTVAVQ PSAGEDKAVV LSTTKTKKQN TPAKLQHKTL MRKEFRKMAK
101: SVKNQVCDNY YRPDLTKPAL ARLSAVYRSL QVSKSGIKKK NRQPTKL
101: SVKNQVCDNY YRPDLTKPAL ARLSAVYRSL QVSKSGIKKK NRQPTKL
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.