Factsheet for VIT_09s0002g02560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044720.1.1	Tomato	nucleus	33.56	92.59
PGSC0003DMT400012339	Potato	cytosol	81.21	84.62
VIT_04s0008g00790.t01	Wine grape	cytosol	81.21	84.03
Solyc03g121330.2.1	Tomato	nucleus	80.54	83.92
KRH47170	Soybean	endoplasmic reticulum	83.89	83.33
PGSC0003DMT400006681	Potato	extracellular	79.87	83.22
KRH44206	Soybean	nucleus	83.22	82.67
PGSC0003DMT400016607	Potato	cytosol	79.19	82.52
KRH09991	Soybean	cytosol, endoplasmic reticulum	82.55	82.0
KRH23342	Soybean	endoplasmic reticulum	81.88	81.33
GSMUA_Achr1P05120_001	Banana	cytosol	77.18	77.7
EES01347	Sorghum	cytosol	73.83	75.86
AT2G19730.2	Thale cress	cytosol	72.48	75.52
Os01t0706500-00	Rice	plastid	73.15	75.17
AT4G29410.1	Thale cress	cytosol	71.81	74.83
Bra011106.1-P	Field mustard	cytosol	71.14	74.13
CDY35881	Canola	cytosol	71.14	74.13
Bra039014.1-P	Field mustard	cytosol	71.14	74.13
CDX81940	Canola	cytosol	71.14	74.13
KXG22440	Sorghum	cytosol	72.48	73.97
Os02t0821200-01	Rice	plastid	45.64	73.91
Zm00001d009417_P006	Maize	cytosol	72.48	73.47
CDY21652	Canola	cytosol	70.47	73.43
Bra031093.1-P	Field mustard	cytosol	70.47	73.43
Bra036710.1-P	Field mustard	cytosol	70.47	73.43
CDX82715	Canola	cytosol	70.47	73.43
Bra010329.1-P	Field mustard	cytosol	69.8	72.73
CDY30215	Canola	cytosol	69.8	72.73
CDY14213	Canola	cytosol	69.8	72.73
CDY62032	Canola	cytosol	69.13	72.03
Bra024145.1-P	Field mustard	cytosol	69.13	72.03
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	55.7	69.75
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	67.79	68.71
TraesCS3B01G284300.1	Wheat	cytosol	65.77	68.53
HORVU3Hr1G066430.1	Barley	cytosol	65.77	68.53
TraesCS3D01G253300.1	Wheat	cytosol	65.77	68.53
TraesCS1D01G368700.1	Wheat	nucleus	67.11	68.03
TraesCS3A01G252700.1	Wheat	cytosol, golgi	65.1	67.83
TraesCS1B01G380800.1	Wheat	golgi	66.44	67.35
GSMUA_Achr5P09610_001	Banana	plasma membrane	82.55	66.85
TraesCS5D01G549700.1	Wheat	cytosol	44.3	63.46
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	56.38	63.16
CDY06809	Canola	extracellular	71.81	62.94
TraesCS2D01G587700.1	Wheat	cytosol, plastid	44.97	62.62
TraesCS7B01G324000.1	Wheat	plastid	43.62	62.5
TraesCS3A01G379600.1	Wheat	cytosol	44.97	62.04
CDY43499	Canola	mitochondrion	71.81	61.85
KRH45415	Soybean	mitochondrion	28.86	61.43
TraesCS1A01G215000.1	Wheat	cytosol	44.3	61.11
Bra033205.1-P	Field mustard	cytosol	24.16	60.0
CDY03348	Canola	plastid	70.47	60.0
CDY41134	Canola	cytosol	24.16	60.0
TraesCS3B01G505000.1	Wheat	golgi	44.3	58.41
GSMUA_Achr6P33480_001	Banana	nucleus	76.51	57.58
TraesCS7B01G281500.1	Wheat	cytosol	42.95	56.64
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	70.47	55.56
CDX91669	Canola	mitochondrion	23.49	53.85
CDY48720	Canola	cytosol	70.47	51.72
GSMUA_Achr1P28120_001	Banana	mitochondrion	79.19	50.86
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	67.11	50.76
CDY47764	Canola	cytosol	54.36	41.33
TraesCS6D01G263800.1	Wheat	cytosol	46.98	40.23
TraesCS3D01G497400.1	Wheat	cytosol	44.97	38.51
TraesCS5A01G102300.1	Wheat	cytosol	44.3	37.71
Bra001548.1-P	Field mustard	nucleus	26.85	33.61
TraesCS6A01G220700.1	Wheat	cytosol	29.53	20.28

Protein Annotations

EntrezGene:100261817	wikigene:100261817	MapMan:17.1.2.1.29	Gene3D:3.30.390.110	UniProt:A5C7R4	EMBL:AM485285
ProteinID:CAN84039	ProteinID:CAN84039.1	ProteinID:CBI35985	ProteinID:CBI35985.3	EMBL:FN596494	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:L28e/Mak16	EntrezGene:LOC100261817	wikigene:LOC100261817
PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	InterPro:Ribosomal_L28e	TIGR:TC53321	TIGR:TC60433
UniParc:UPI0001524E09	ArrayExpress:VIT_09s0002g02560	EnsemblPlantsGene:VIT_09s0002g02560	EnsemblPlants:VIT_09s0002g02560.t01	RefSeq:XP_002281233	RefSeq:XP_002281233.1

Description

No Description!

Coordinates

chr9:+:2357363..2360511

Molecular Weight (calculated)

16445.0 Da

IEP (calculated)

11.326

GRAVY (calculated)

-0.660

Length

149 amino acids

Sequence
(BLAST)

001: MATVPGQLIW EIVKKNSSFL VKEFGNGTAS VQFSKESNNL YNVNSYKHSG LANHKTVTIQ GGKDNAVVLA TTKTKKQNKP GSLLHKSAMK KEFRRMAKAV
101: SNQVGDNYYR PDLKKAALAR LSAVHRSLKV AKSGVKKRNR QAVKSCGRK

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.