Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G379600.1 | Wheat | cytosol | 23.96 | 48.15 |
| TraesCS1A01G215000.1 | Wheat | cytosol | 23.5 | 47.22 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 27.65 | 40.82 |
| Os02t0821200-01 | Rice | plastid | 16.59 | 39.13 |
| CDX91669 | Canola | mitochondrion | 11.52 | 38.46 |
| KXG22440 | Sorghum | cytosol | 23.96 | 35.62 |
| Zm00001d009417_P006 | Maize | cytosol | 23.5 | 34.69 |
| TraesCS3A01G252700.1 | Wheat | cytosol, golgi | 22.58 | 34.27 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 20.28 | 33.08 |
| TraesCS1A01G363700.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole | 28.57 | 31.47 |
| TraesCS5A01G102300.1 | Wheat | cytosol | 24.88 | 30.86 |
| Solyc03g121330.2.1 | Tomato | nucleus | 19.82 | 30.07 |
| PGSC0003DMT400006681 | Potato | extracellular | 19.82 | 30.07 |
| KRH23342 | Soybean | endoplasmic reticulum | 20.74 | 30.0 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 20.74 | 30.0 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 20.28 | 29.53 |
| PGSC0003DMT400012339 | Potato | cytosol | 19.35 | 29.37 |
| KRH44206 | Soybean | nucleus | 20.28 | 29.33 |
| KRH47170 | Soybean | endoplasmic reticulum | 20.28 | 29.33 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 15.67 | 28.57 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 18.89 | 28.47 |
| PGSC0003DMT400016607 | Potato | cytosol | 18.43 | 27.97 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 23.04 | 26.45 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 17.97 | 26.35 |
| CDY62032 | Canola | cytosol | 17.05 | 25.87 |
| AT2G19730.2 | Thale cress | cytosol | 17.05 | 25.87 |
| Bra010329.1-P | Field mustard | cytosol | 17.05 | 25.87 |
| Bra011106.1-P | Field mustard | cytosol | 17.05 | 25.87 |
| Bra024145.1-P | Field mustard | cytosol | 17.05 | 25.87 |
| Bra036710.1-P | Field mustard | cytosol | 17.05 | 25.87 |
| CDX82715 | Canola | cytosol | 17.05 | 25.87 |
| CDY14213 | Canola | cytosol | 17.05 | 25.87 |
| CDY21652 | Canola | cytosol | 17.05 | 25.87 |
| KRH45415 | Soybean | mitochondrion | 8.29 | 25.71 |
| Bra039014.1-P | Field mustard | cytosol | 16.59 | 25.17 |
| CDX81940 | Canola | cytosol | 16.59 | 25.17 |
| Bra031093.1-P | Field mustard | cytosol | 16.59 | 25.17 |
| CDY30215 | Canola | cytosol | 16.59 | 25.17 |
| CDY35881 | Canola | cytosol | 16.59 | 25.17 |
| AT4G29410.1 | Thale cress | cytosol | 16.13 | 24.48 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 20.28 | 23.91 |
| CDY03348 | Canola | plastid | 18.43 | 22.86 |
| CDY06809 | Canola | extracellular | 17.05 | 21.76 |
| CDY43499 | Canola | mitochondrion | 17.05 | 21.39 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 22.12 | 20.69 |
| Solyc12g044720.1.1 | Tomato | nucleus | 5.07 | 20.37 |
| CDY48720 | Canola | cytosol | 18.89 | 20.2 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 17.97 | 19.7 |
| CDY47764 | Canola | cytosol | 15.21 | 16.84 |
| CDY41134 | Canola | cytosol | 3.69 | 13.33 |
| Bra033205.1-P | Field mustard | cytosol | 3.69 | 13.33 |
| Bra001548.1-P | Field mustard | nucleus | 4.61 | 8.4 |
Protein Annotations
| MapMan:17.1.2.1.29 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L28e/Mak16 | PFAM:PF01778 |
| PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | InterPro:Ribosomal_L28e | EnsemblPlantsGene:TraesCS6A01G220700 | EnsemblPlants:TraesCS6A01G220700.1 | SEG:seg |
Description
No Description!
Coordinates
chr6A:-:410043875..410046808
Molecular Weight (calculated)
24113.0 Da
IEP (calculated)
10.719
GRAVY (calculated)
-0.675
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGRLLYTS ETERERWWRG RTVHRGGNGC RDDMAGRRCR RAAGGGDKRK AATLSAGRAK GNDYRSKVSG LGACEEEQVL LDQAVWQLQC QGPVSQGPND
101: LYNVCYYKFL GLANNKTVAV QPSAGEEKAV VLSTSKTKKQ DTHAKLLHKT LMRKQFRKMA GHGVLLELRA DSPKPTSLEV ASQESAYPEV VPGTRPRVGS
201: RPSCRRLLRR RLFVLES
101: LYNVCYYKFL GLANNKTVAV QPSAGEEKAV VLSTSKTKKQ DTHAKLLHKT LMRKQFRKMA GHGVLLELRA DSPKPTSLEV ASQESAYPEV VPGTRPRVGS
201: RPSCRRLLRR RLFVLES
001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA
Arabidopsis Description
RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.