Factsheet for Os02t0821200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044720.1.1	Tomato	nucleus	44.57	75.93
KXG22440	Sorghum	cytosol	91.3	57.53
Zm00001d009417_P006	Maize	cytosol	88.04	55.1
Os01t0706500-00	Rice	plastid	85.87	54.48
CDY41134	Canola	cytosol	34.78	53.33
Bra033205.1-P	Field mustard	cytosol	34.78	53.33
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	83.7	52.38
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	67.39	52.1
TraesCS1D01G368700.1	Wheat	nucleus	82.61	51.7
TraesCS1B01G380800.1	Wheat	golgi	81.52	51.02
VIT_09s0002g02560.t01	Wine grape	cytosol	73.91	45.64
KRH47170	Soybean	endoplasmic reticulum	72.83	44.67
KRH09991	Soybean	cytosol, endoplasmic reticulum	72.83	44.67
VIT_04s0008g00790.t01	Wine grape	cytosol	69.57	44.44
PGSC0003DMT400016607	Potato	cytosol	68.48	44.06
PGSC0003DMT400012339	Potato	cytosol	68.48	44.06
KRH44206	Soybean	nucleus	71.74	44.0
KRH23342	Soybean	endoplasmic reticulum	71.74	44.0
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	90.22	43.92
PGSC0003DMT400006681	Potato	extracellular	67.39	43.36
GSMUA_Achr1P05120_001	Banana	cytosol	69.57	43.24
Solyc03g121330.2.1	Tomato	nucleus	66.3	42.66
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	58.7	40.6
Bra011106.1-P	Field mustard	cytosol	63.04	40.56
AT2G19730.2	Thale cress	cytosol	60.87	39.16
CDY35881	Canola	cytosol	60.87	39.16
Bra010329.1-P	Field mustard	cytosol	60.87	39.16
Bra039014.1-P	Field mustard	cytosol	60.87	39.16
CDY14213	Canola	cytosol	60.87	39.16
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	82.61	38.58
CDY30215	Canola	cytosol	59.78	38.46
AT4G29410.1	Thale cress	cytosol	59.78	38.46
Bra024145.1-P	Field mustard	cytosol	59.78	38.46
Bra031093.1-P	Field mustard	cytosol	59.78	38.46
Bra036710.1-P	Field mustard	cytosol	59.78	38.46
CDY62032	Canola	cytosol	59.78	38.46
CDX81940	Canola	cytosol	59.78	38.46
CDY21652	Canola	cytosol	59.78	38.46
CDX82715	Canola	cytosol	59.78	38.46
TraesCS7B01G324000.1	Wheat	plastid	41.3	36.54
TraesCS5D01G549700.1	Wheat	cytosol	41.3	36.54
TraesCS3B01G505000.1	Wheat	golgi	44.57	36.28
GSMUA_Achr5P09610_001	Banana	plasma membrane	71.74	35.87
TraesCS2D01G587700.1	Wheat	cytosol, plastid	41.3	35.51
TraesCS7B01G281500.1	Wheat	cytosol	43.48	35.4
TraesCS3A01G379600.1	Wheat	cytosol	41.3	35.19
CDY06809	Canola	extracellular	63.04	34.12
CDY43499	Canola	mitochondrion	63.04	33.53
TraesCS1A01G215000.1	Wheat	cytosol	39.13	33.33
GSMUA_Achr6P33480_001	Banana	nucleus	68.48	31.82
CDY03348	Canola	plastid	59.78	31.43
CDX91669	Canola	mitochondrion	20.65	29.23
GSMUA_Achr1P28120_001	Banana	mitochondrion	72.83	28.88
CDY48720	Canola	cytosol	59.78	27.09
CDY47764	Canola	cytosol	54.35	25.51
TraesCS6D01G263800.1	Wheat	cytosol	45.65	24.14
TraesCS3D01G497400.1	Wheat	cytosol	43.48	22.99
TraesCS5A01G102300.1	Wheat	cytosol	42.39	22.29
TraesCS6A01G220700.1	Wheat	cytosol	39.13	16.59
KRH45415	Soybean	mitochondrion	9.78	12.86
Bra001548.1-P	Field mustard	nucleus	2.17	1.68

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	ProteinID:BAF10463.1	ProteinID:BAS81629.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:L28e/Mak16	EnsemblPlantsGene:Os02g0821200	EnsemblPlants:Os02t0821200-01	PFAM:PF01778
PANTHER:PTHR10544	PANTHER:PTHR10544:SF5	UniProt:Q0DWC5	InterPro:Ribosomal_L28e	UniParc:UPI0000DF08F3	:

Description

Ribosomal protein L28e domain containing protein. (Os02t0821200-01)

Coordinates

chr2:-:35256169..35257359

Molecular Weight (calculated)

10245.6 Da

IEP (calculated)

11.395

GRAVY (calculated)

-0.757

Length

92 amino acids

Sequence
(BLAST)

1: TVTIQPSGGK DAAVVLSTTK TKKQNAPAKL YHKSVMRKEF RKMAKAVKNQ VSDNYYRPDL TKPALARLSS VYRSLQVAKS GVKKKNRQPA KL

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.