Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G379600.1 | Wheat | cytosol | 97.2 | 96.3 |
| TraesCS7B01G324000.1 | Wheat | plastid | 87.85 | 90.38 |
| TraesCS5D01G549700.1 | Wheat | cytosol | 85.98 | 88.46 |
| HORVU1Hr1G079370.1 | Barley | cytosol, peroxisome, plastid | 94.39 | 68.71 |
| TraesCS1D01G368700.1 | Wheat | nucleus | 94.39 | 68.71 |
| Os05t0541900-01 | Rice | cytosol, golgi, nucleus, plasma membrane, plastid | 74.77 | 60.15 |
| TraesCS3D01G253300.1 | Wheat | cytosol | 74.77 | 55.94 |
| TraesCS3D01G497400.1 | Wheat | cytosol | 88.78 | 54.6 |
| KXG22440 | Sorghum | cytosol | 73.83 | 54.11 |
| Zm00001d009417_P006 | Maize | cytosol | 73.83 | 53.74 |
| TraesCS6D01G263800.1 | Wheat | cytosol | 82.24 | 50.57 |
| Solyc03g121330.2.1 | Tomato | nucleus | 63.55 | 47.55 |
| PGSC0003DMT400006681 | Potato | extracellular | 63.55 | 47.55 |
| PGSC0003DMT400016607 | Potato | cytosol | 62.62 | 46.85 |
| PGSC0003DMT400012339 | Potato | cytosol | 62.62 | 46.85 |
| CDX91669 | Canola | mitochondrion | 28.04 | 46.15 |
| KRH45415 | Soybean | mitochondrion | 29.91 | 45.71 |
| CDY14213 | Canola | cytosol | 60.75 | 45.45 |
| CDY30215 | Canola | cytosol | 60.75 | 45.45 |
| Bra010329.1-P | Field mustard | cytosol | 60.75 | 45.45 |
| AT2G19730.2 | Thale cress | cytosol | 60.75 | 45.45 |
| Bra011106.1-P | Field mustard | cytosol | 60.75 | 45.45 |
| CDY62032 | Canola | cytosol | 60.75 | 45.45 |
| Bra024145.1-P | Field mustard | cytosol | 60.75 | 45.45 |
| VIT_09s0002g02560.t01 | Wine grape | cytosol | 62.62 | 44.97 |
| Bra039014.1-P | Field mustard | cytosol | 59.81 | 44.76 |
| CDY35881 | Canola | cytosol | 59.81 | 44.76 |
| KRH44206 | Soybean | nucleus | 62.62 | 44.67 |
| KRH47170 | Soybean | endoplasmic reticulum | 62.62 | 44.67 |
| GSMUA_Achr1P05120_001 | Banana | cytosol | 61.68 | 44.59 |
| Bra036710.1-P | Field mustard | cytosol | 58.88 | 44.06 |
| AT4G29410.1 | Thale cress | cytosol | 58.88 | 44.06 |
| CDX82715 | Canola | cytosol | 58.88 | 44.06 |
| VIT_04s0008g00790.t01 | Wine grape | cytosol | 58.88 | 43.75 |
| Bra031093.1-P | Field mustard | cytosol | 57.94 | 43.36 |
| CDX81940 | Canola | cytosol | 57.94 | 43.36 |
| KRH23342 | Soybean | endoplasmic reticulum | 60.75 | 43.33 |
| KRH09991 | Soybean | cytosol, endoplasmic reticulum | 60.75 | 43.33 |
| CDY21652 | Canola | cytosol | 57.01 | 42.66 |
| Os02t0821200-01 | Rice | plastid | 35.51 | 41.3 |
| Zm00001d038865_P003 | Maize | cytosol, mitochondrion, nucleus, plastid | 70.09 | 39.68 |
| CDY06809 | Canola | extracellular | 61.68 | 38.82 |
| CDY43499 | Canola | mitochondrion | 61.68 | 38.15 |
| GSMUA_Achr5P09610_001 | Banana | plasma membrane | 65.42 | 38.04 |
| CDY03348 | Canola | plastid | 58.88 | 36.0 |
| GSMUA_Achr6P33480_001 | Banana | nucleus | 61.68 | 33.33 |
| Solyc06g062500.2.1 | Tomato | endoplasmic reticulum, plastid | 34.58 | 31.09 |
| CDY48720 | Canola | cytosol | 58.88 | 31.03 |
| GSMUA_Achr1P28120_001 | Banana | mitochondrion | 64.49 | 29.74 |
| Bra001548.1-P | Field mustard | nucleus | 32.71 | 29.41 |
| CDY47764 | Canola | cytosol | 41.12 | 22.45 |
| Solyc12g044720.1.1 | Tomato | nucleus | 9.35 | 18.52 |
| CDY41134 | Canola | cytosol | 8.41 | 15.0 |
| Bra033205.1-P | Field mustard | cytosol | 8.41 | 15.0 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G587700.1 | EnsemblPlantsGene:TraesCS2D01G587700 | Gene3D:3.30.390.110 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:L28e/Mak16 |
| InterPro:Ribosomal_L28e | PANTHER:PTHR10544 | PANTHER:PTHR10544:SF5 | PFAM:PF01778 | MapMan:17.1.2.1.29 | : |
Description
No Description!
Coordinates
chr2D:+:645429150..645430196
Molecular Weight (calculated)
12073.6 Da
IEP (calculated)
10.730
GRAVY (calculated)
-0.646
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTVPGSLVW ELVKNNCFLI KQFGNSNAKV RFSKEPNNLY NVHSYKFSSL ANSKTVAVQP SAGEDKAVVL STTKTKKQNT PAKLQHKTLM HKEFRKMAKS
101: VKNQEMD
101: VKNQEMD
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.