Factsheet for PGSC0003DMT400012339

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006681	Potato	extracellular	92.31	92.31
PGSC0003DMT400016607	Potato	cytosol	90.21	90.21
VIT_04s0008g00790.t01	Wine grape	cytosol	82.52	81.94
VIT_09s0002g02560.t01	Wine grape	cytosol	84.62	81.21
KRH09991	Soybean	cytosol, endoplasmic reticulum	83.92	80.0
KRH23342	Soybean	endoplasmic reticulum	83.22	79.33
KRH47170	Soybean	endoplasmic reticulum	83.22	79.33
KRH44206	Soybean	nucleus	82.52	78.67
Bra010329.1-P	Field mustard	cytosol	74.83	74.83
Bra011106.1-P	Field mustard	cytosol	74.83	74.83
CDY14213	Canola	cytosol	74.83	74.83
CDY62032	Canola	cytosol	74.13	74.13
Bra024145.1-P	Field mustard	cytosol	74.13	74.13
CDY30215	Canola	cytosol	74.13	74.13
CDY21652	Canola	cytosol	74.13	74.13
EES01347	Sorghum	cytosol	74.83	73.79
Os01t0706500-00	Rice	plastid	74.83	73.79
CDY35881	Canola	cytosol	73.43	73.43
Bra039014.1-P	Field mustard	cytosol	73.43	73.43
AT2G19730.2	Thale cress	cytosol	73.43	73.43
CDX82715	Canola	cytosol	72.73	72.73
CDX81940	Canola	cytosol	72.73	72.73
Bra036710.1-P	Field mustard	cytosol	72.73	72.73
GSMUA_Achr1P05120_001	Banana	cytosol	74.83	72.3
AT4G29410.1	Thale cress	cytosol	72.03	72.03
Bra031093.1-P	Field mustard	cytosol	72.03	72.03
KXG22440	Sorghum	cytosol	72.03	70.55
Zm00001d009417_P006	Maize	cytosol	71.33	69.39
Os02t0821200-01	Rice	plastid	44.06	68.48
TraesCS3D01G253300.1	Wheat	cytosol	67.83	67.83
TraesCS3B01G284300.1	Wheat	cytosol	67.83	67.83
HORVU3Hr1G066430.1	Barley	cytosol	67.83	67.83
TraesCS3A01G252700.1	Wheat	cytosol, golgi	67.13	67.13
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	67.83	65.99
KRH45415	Soybean	mitochondrion	32.17	65.71
TraesCS1D01G368700.1	Wheat	nucleus	67.13	65.31
TraesCS1B01G380800.1	Wheat	golgi	67.13	65.31
CDY06809	Canola	extracellular	75.52	63.53
CDY41134	Canola	cytosol	26.57	63.33
Bra033205.1-P	Field mustard	cytosol	26.57	63.33
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	58.74	63.16
TraesCS2D01G587700.1	Wheat	cytosol, plastid	46.85	62.62
TraesCS5D01G549700.1	Wheat	cytosol	45.45	62.5
CDY43499	Canola	mitochondrion	75.52	62.43
TraesCS3A01G379600.1	Wheat	cytosol	46.85	62.04
GSMUA_Achr5P09610_001	Banana	plasma membrane	77.62	60.33
CDY03348	Canola	plastid	72.73	59.43
TraesCS1A01G215000.1	Wheat	cytosol	44.76	59.26
TraesCS7B01G324000.1	Wheat	plastid	42.66	58.65
TraesCS3B01G505000.1	Wheat	golgi	46.15	58.41
TraesCS7B01G281500.1	Wheat	cytosol	44.76	56.64
GSMUA_Achr6P33480_001	Banana	nucleus	74.13	53.54
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	70.63	53.44
CDY48720	Canola	cytosol	72.73	51.23
CDX91669	Canola	mitochondrion	23.08	50.77
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	67.13	48.73
GSMUA_Achr1P28120_001	Banana	mitochondrion	76.92	47.41
CDY47764	Canola	cytosol	57.34	41.84
TraesCS6D01G263800.1	Wheat	cytosol	48.25	39.66
TraesCS3D01G497400.1	Wheat	cytosol	46.15	37.93
TraesCS5A01G102300.1	Wheat	cytosol	45.45	37.14
Bra001548.1-P	Field mustard	nucleus	26.57	31.93
TraesCS6A01G220700.1	Wheat	cytosol	29.37	19.35

Protein Annotations

EntrezGene:102583234	MapMan:17.1.2.1.29	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:L28e/Mak16
UniProt:M1A136	PFAM:PF01778	EnsemblPlantsGene:PGSC0003DMG400004838	PGSC:PGSC0003DMG400004838	EnsemblPlants:PGSC0003DMT400012339	PANTHER:PTHR10544
PANTHER:PTHR10544:SF5	InterPro:Ribosomal_L28e	UniParc:UPI0002968FEB	RefSeq:XP_006357368.1	:	:

Description

Ribosomal protein L28 [Source:PGSC_GENE;Acc:PGSC0003DMG400004838]

Coordinates

chr6:-:48898939..48901054

Molecular Weight (calculated)

15863.3 Da

IEP (calculated)

11.248

GRAVY (calculated)

-0.639

Length

143 amino acids

Sequence
(BLAST)

001: MTTVPAQLVW EIVKKNNSFL VKEFGNGTAG VVFSKEPNNL YNLHSYKHSG LANKKTVTIQ PGGKDQSVLL ATSKTKKQNK PSSLLNKSVM KKEFRRMAKA
101: VSNQVADNYY RPDLKKASLA RLSAVNKSLK VAKSGVKKRN RQA

Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)

001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA

Arabidopsis Description

RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.