Factsheet for GSMUA_Achr5P09610_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P05120_001	Banana	cytosol	71.2	88.51
VIT_09s0002g02560.t01	Wine grape	cytosol	66.85	82.55
Solyc12g044720.1.1	Tomato	nucleus	23.91	81.48
VIT_04s0008g00790.t01	Wine grape	cytosol	61.41	78.47
Solyc03g121330.2.1	Tomato	nucleus	60.87	78.32
PGSC0003DMT400012339	Potato	cytosol	60.33	77.62
PGSC0003DMT400006681	Potato	extracellular	60.33	77.62
EES01347	Sorghum	cytosol	60.87	77.24
Os01t0706500-00	Rice	plastid	60.33	76.55
PGSC0003DMT400016607	Potato	cytosol	59.24	76.22
KXG22440	Sorghum	cytosol	59.78	75.34
KRH47170	Soybean	endoplasmic reticulum	60.87	74.67
KRH09991	Soybean	cytosol, endoplasmic reticulum	60.87	74.67
KRH23342	Soybean	endoplasmic reticulum	60.87	74.67
Zm00001d009417_P006	Maize	cytosol	59.24	74.15
KRH44206	Soybean	nucleus	59.78	73.33
AT2G19730.2	Thale cress	cytosol	55.98	72.03
HORVU3Hr1G066430.1	Barley	cytosol	55.98	72.03
AT4G29410.1	Thale cress	cytosol	55.98	72.03
TraesCS3B01G284300.1	Wheat	cytosol	55.98	72.03
TraesCS3D01G253300.1	Wheat	cytosol	55.98	72.03
Os02t0821200-01	Rice	plastid	35.87	71.74
CDX81940	Canola	cytosol	55.43	71.33
Bra031093.1-P	Field mustard	cytosol	55.43	71.33
Bra039014.1-P	Field mustard	cytosol	55.43	71.33
TraesCS3A01G252700.1	Wheat	cytosol, golgi	55.43	71.33
CDY35881	Canola	cytosol	55.43	71.33
HORVU1Hr1G079370.1	Barley	cytosol, peroxisome, plastid	56.52	70.75
TraesCS1D01G368700.1	Wheat	nucleus	56.52	70.75
CDY21652	Canola	cytosol	54.89	70.63
CDX82715	Canola	cytosol	54.89	70.63
Bra036710.1-P	Field mustard	cytosol	54.89	70.63
TraesCS1B01G380800.1	Wheat	golgi	55.98	70.07
Bra011106.1-P	Field mustard	cytosol	54.35	69.93
CDY30215	Canola	cytosol	53.8	69.23
CDY14213	Canola	cytosol	53.8	69.23
Bra010329.1-P	Field mustard	cytosol	53.8	69.23
GSMUA_Achr6P33480_001	Banana	nucleus	74.46	69.19
Bra024145.1-P	Field mustard	cytosol	53.26	68.53
CDY62032	Canola	cytosol	53.26	68.53
Os05t0541900-01	Rice	cytosol, golgi, nucleus, plasma membrane, plastid	48.37	66.92
TraesCS2D01G587700.1	Wheat	cytosol, plastid	38.04	65.42
TraesCS5D01G549700.1	Wheat	cytosol	36.41	64.42
TraesCS3A01G379600.1	Wheat	cytosol	37.5	63.89
TraesCS7B01G324000.1	Wheat	plastid	35.87	63.46
Solyc06g062500.2.1	Tomato	endoplasmic reticulum, plastid	40.76	63.03
TraesCS1A01G215000.1	Wheat	cytosol	36.96	62.96
TraesCS3B01G505000.1	Wheat	golgi	38.04	61.95
KRH45415	Soybean	mitochondrion	22.83	60.0
CDY06809	Canola	extracellular	55.43	60.0
TraesCS7B01G281500.1	Wheat	cytosol	36.41	59.29
CDY43499	Canola	mitochondrion	55.43	58.96
GSMUA_Achr1P28120_001	Banana	mitochondrion	73.91	58.62
CDY03348	Canola	plastid	55.43	58.29
Zm00001d038865_P003	Maize	cytosol, mitochondrion, nucleus, plastid	58.7	57.14
TraesCS1A01G363700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole	57.61	53.81
CDY41134	Canola	cytosol	16.85	51.67
Bra033205.1-P	Field mustard	cytosol	16.85	51.67
CDY48720	Canola	cytosol	56.52	51.23
CDX91669	Canola	mitochondrion	17.39	49.23
TraesCS6D01G263800.1	Wheat	cytosol	40.22	42.53
TraesCS3D01G497400.1	Wheat	cytosol	39.67	41.95
TraesCS5A01G102300.1	Wheat	cytosol	38.04	40.0
CDY47764	Canola	cytosol	42.39	39.8
Bra001548.1-P	Field mustard	nucleus	22.28	34.45
TraesCS6A01G220700.1	Wheat	cytosol	23.91	20.28

Protein Annotations

MapMan:17.1.2.1.29	Gene3D:3.30.390.110	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G09610_001	EnsemblPlants:GSMUA_Achr5P09610_001
EnsemblPlants:GSMUA_Achr5T09610_001	InterPro:L28e/Mak16	UniProt:M0SX40	PFAM:PF01778	PANTHER:PTHR10544	PANTHER:PTHR10544:SF5
InterPro:Ribosomal_L28e	UniParc:UPI0002954AD5	:	:	:	:

Description

60S ribosomal protein L28-2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G09610_001]

Coordinates

chr5:+:6857272..6859748

Molecular Weight (calculated)

20683.4 Da

IEP (calculated)

11.765

GRAVY (calculated)

-0.546

Length

184 amino acids

Sequence
(BLAST)

001: MLLGLTEAFG LRRFRSRRIK TIERDSLRCL QTQSVQMATV PGPLIWEIVK KNNSFLVKQF GNSTAMVQFS KEPNNLYNVN SYKHSGLANK KSVTIQGGGK
101: DLSVVLATTK TKKQNKPGSL HHRSAMKKEF RKMAKVVINQ VTDNYYRPDL TRAALARLSA VHRSLKVAKS GAKKRNRQAV KVGK

Best Arabidopsis Sequence Match ( AT4G29410.2 )
(BLAST)

001: MATVPGQLIW EIVKRNNCFL VKQFGRGNAK VQFSKESNNL VNINSYKHSG LANKKTVTIQ AAGKDQGVVL GTTKTKRQNK PKLSVNKSIL KKEFSRMSKV
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGPKRRN RQA

Arabidopsis Description

RPL28C60S ribosomal protein L28-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0E2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.