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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • plastid 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
 plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400006681 Potato extracellular 95.8 95.8
Solyc12g044720.1.1 Tomato nucleus 33.57 88.89
VIT_04s0008g00790.t01 Wine grape cytosol 83.22 82.64
VIT_09s0002g02560.t01 Wine grape cytosol 83.92 80.54
KRH47170 Soybean endoplasmic reticulum 82.52 78.67
KRH09991 Soybean cytosol, endoplasmic reticulum 81.82 78.0
KRH44206 Soybean nucleus 81.82 78.0
KRH23342 Soybean endoplasmic reticulum 81.12 77.33
Bra024145.1-P Field mustard cytosol 74.83 74.83
CDY21652 Canola cytosol 74.13 74.13
Bra010329.1-P Field mustard cytosol 74.13 74.13
Bra011106.1-P Field mustard cytosol 74.13 74.13
CDY14213 Canola cytosol 74.13 74.13
GSMUA_Achr1P05120_001 Banana cytosol 76.22 73.65
CDY35881 Canola cytosol 73.43 73.43
AT2G19730.2 Thale cress cytosol 73.43 73.43
CDY62032 Canola cytosol 73.43 73.43
CDY30215 Canola cytosol 73.43 73.43
CDX81940 Canola cytosol 73.43 73.43
Bra039014.1-P Field mustard cytosol 73.43 73.43
EES01347 Sorghum cytosol 74.13 73.1
CDX82715 Canola cytosol 72.73 72.73
Bra036710.1-P Field mustard cytosol 72.73 72.73
Os01t0706500-00 Rice plastid 73.43 72.41
AT4G29410.1 Thale cress cytosol 72.03 72.03
Bra031093.1-P Field mustard cytosol 72.03 72.03
Solyc06g062500.2.1 Tomato endoplasmic reticulum, plastid 58.74 70.59
KXG22440 Sorghum cytosol 72.03 70.55
Zm00001d009417_P006 Maize cytosol 72.03 70.07
HORVU1Hr1G079370.1 Barley cytosol, peroxisome, plastid 69.23 67.35
TraesCS1D01G368700.1 Wheat nucleus 69.23 67.35
TraesCS1B01G380800.1 Wheat golgi 69.23 67.35
TraesCS3B01G284300.1 Wheat cytosol 67.13 67.13
HORVU3Hr1G066430.1 Barley cytosol 67.13 67.13
TraesCS3D01G253300.1 Wheat cytosol 67.13 67.13
TraesCS3A01G252700.1 Wheat cytosol, golgi 66.43 66.43
Os02t0821200-01 Rice plastid 42.66 66.3
KRH45415 Soybean mitochondrion 31.47 64.29
TraesCS2D01G587700.1 Wheat cytosol, plastid 47.55 63.55
TraesCS5D01G549700.1 Wheat cytosol 46.15 63.46
Bra033205.1-P Field mustard cytosol 26.57 63.33
CDY41134 Canola cytosol 26.57 63.33
TraesCS3A01G379600.1 Wheat cytosol 47.55 62.96
CDY06809 Canola extracellular 74.83 62.94
CDY43499 Canola mitochondrion 74.83 61.85
GSMUA_Achr5P09610_001 Banana plasma membrane 78.32 60.87
Os05t0541900-01 Rice cytosol, golgi, nucleus, plasma membrane, plastid 55.94 60.15
TraesCS7B01G324000.1 Wheat plastid 43.36 59.62
CDY03348 Canola plastid 72.73 59.43
TraesCS3B01G505000.1 Wheat golgi 46.85 59.29
TraesCS1A01G215000.1 Wheat cytosol 44.76 59.26
TraesCS7B01G281500.1 Wheat cytosol 45.45 57.52
CDX91669 Canola mitochondrion 25.17 55.38
GSMUA_Achr6P33480_001 Banana nucleus 76.22 55.05
Zm00001d038865_P003 Maize cytosol, mitochondrion, nucleus, plastid 70.63 53.44
CDY48720 Canola cytosol 72.73 51.23
TraesCS1A01G363700.1 Wheat cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, plastid, vacuole 69.23 50.25
GSMUA_Achr1P28120_001 Banana mitochondrion 78.32 48.28
CDY47764 Canola cytosol 55.24 40.31
TraesCS6D01G263800.1 Wheat cytosol 48.25 39.66
TraesCS3D01G497400.1 Wheat cytosol 46.85 38.51
TraesCS5A01G102300.1 Wheat cytosol 46.85 38.29
Bra001548.1-P Field mustard nucleus 27.27 32.77
TraesCS6A01G220700.1 Wheat cytosol 30.07 19.82
Protein Annotations
MapMan:17.1.2.1.29Gene3D:3.30.390.110GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022625
UniProt:K4BMT2InterPro:L28e/Mak16PFAM:PF01778PANTHER:PTHR10544PANTHER:PTHR10544:SF5InterPro:Ribosomal_L28e
EnsemblPlantsGene:Solyc03g121330.2EnsemblPlants:Solyc03g121330.2.1UniParc:UPI00027672F9:::
Description
No Description!
Coordinates
chr3:+:69461363..69463637
Molecular Weight (calculated)
15944.4 Da
IEP (calculated)
11.243
GRAVY (calculated)
-0.712
Length
143 amino acids
Sequence
(BLAST)
001: MTTVPGQLVW EIVKKNNSFL VKEFGNGTAG VVFSKEPNNL YNLHSYKHSG LANKKTVTIQ PDGKDKSVLL ATSKTKKQNK PSRLLNKSVM KKEFSRMAKA
101: VTNQVGDNYY RPDLKKAALA RLSAVHRSLK VTKSGAKKRN RQA
Best Arabidopsis Sequence Match ( AT2G19730.2 )
(BLAST)
001: MATVPGQLIW EIVKNNNCFL VKQFGRGNSK VQFSKETNNL TNVHSYKHSG LANKKTVTIQ AADKDQAVVL ATTKTKKQNK PKLSVNKSIL KKEFPRMSKA
101: VANQVVDNYY RPDLKKAALA RLSAISKGLR VAKSGAKQRN RQA
Arabidopsis Description
RPL28A60S ribosomal protein L28-1 [Source:UniProtKB/Swiss-Prot;Acc:O82204]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.