Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g081850.1.1 | Tomato | cytosol | 98.34 | 98.02 |
| PGSC0003DMT400054965 | Potato | cytosol | 85.43 | 86.0 |
| KRH72168 | Soybean | cytosol | 69.54 | 68.85 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 72.85 | 67.9 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 61.26 | 67.52 |
| KRH32862 | Soybean | cytosol | 67.88 | 66.99 |
| Bra001422.1-P | Field mustard | cytosol | 71.19 | 64.56 |
| CDY70958 | Canola | cytosol | 71.19 | 64.56 |
| KRH72169 | Soybean | cytosol | 71.52 | 64.48 |
| CDY01061 | Canola | cytosol, plastid | 71.52 | 64.48 |
| KRH32861 | Soybean | mitochondrion | 70.86 | 64.46 |
| CDX73851 | Canola | cytosol | 71.19 | 64.37 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 72.85 | 63.58 |
| CDY08492 | Canola | cytosol | 71.19 | 63.42 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 67.88 | 63.08 |
| EER93336 | Sorghum | cytosol | 62.91 | 61.89 |
| Zm00001d034365_P001 | Maize | plasma membrane | 60.93 | 60.13 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 61.92 | 60.13 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 61.26 | 58.36 |
| Os03t0787000-01 | Rice | plasma membrane | 63.58 | 58.18 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 60.93 | 57.5 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 60.93 | 57.32 |
| Bra033436.1-P | Field mustard | cytosol | 61.92 | 54.68 |
| PGSC0003DMT400055777 | Potato | cytosol | 56.29 | 54.66 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 55.63 | 54.55 |
| CDY23212 | Canola | cytosol | 61.92 | 54.52 |
| KRH68016 | Soybean | cytosol | 52.98 | 54.42 |
| PGSC0003DMT400035739 | Potato | cytosol | 55.63 | 54.19 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 53.97 | 54.15 |
| AT3G52400.1 | Thale cress | cytosol | 60.93 | 53.96 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 45.36 | 53.73 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 59.27 | 53.59 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 59.27 | 53.27 |
| PGSC0003DMT400041982 | Potato | cytosol | 48.01 | 46.62 |
| Zm00001d013115_P001 | Maize | cytosol | 22.52 | 46.58 |
| PGSC0003DMT400072284 | Potato | cytosol | 46.36 | 45.16 |
| PGSC0003DMT400065519 | Potato | cytosol | 45.36 | 43.91 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 41.06 | 42.47 |
| CDX95336 | Canola | cytosol | 13.91 | 40.0 |
| PGSC0003DMT400001933 | Potato | cytosol | 35.1 | 36.18 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 35.43 | 35.79 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 16.23 | 31.61 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:102587324 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | UniProt:M1CQ32 | PFAM:PF00804 |
| PFAM:PF05739 | EnsemblPlantsGene:PGSC0003DMG400028145 | PGSC:PGSC0003DMG400028145 | EnsemblPlants:PGSC0003DMT400072325 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002959F83 | RefSeq:XP_006339172.1 |
| SEG:seg | : | : | : | : | : |
Description
Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400028145]
Coordinates
chr10:-:56168173..56171991
Molecular Weight (calculated)
34500.1 Da
IEP (calculated)
8.687
GRAVY (calculated)
-0.679
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSGSFS RFRNEEQSPN QESPGIQMRQ TGGVNLDKFF EDVETIKDEL KELEKIHTQL HNSHEQSKTL HNAKNVKDLR TKMDNDVSIA LKKAKFIKVR
101: LEALDRSNAA NRSVPGCGPG SSSDRTRTSV VNGLRKKLQE SMNQFNELRQ RMASEYRETV QRRYYTVTGE NPDEGTLDTL ISTGQSETFL QKAIQEQGRG
201: QVMDTVMEIQ ERHEAVKELE RNLKELHQVF MDMAVLVESQ GAQLDDIESQ VNRANSFVRG GAQQLEVARK HQKSSRKWTC IAIIILLIII LVVVLSIQPW
301: KK
101: LEALDRSNAA NRSVPGCGPG SSSDRTRTSV VNGLRKKLQE SMNQFNELRQ RMASEYRETV QRRYYTVTGE NPDEGTLDTL ISTGQSETFL QKAIQEQGRG
201: QVMDTVMEIQ ERHEAVKELE RNLKELHQVF MDMAVLVESQ GAQLDDIESQ VNRANSFVRG GAQQLEVARK HQKSSRKWTC IAIIILLIII LVVVLSIQPW
301: KK
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.