Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033436.1-P | Field mustard | cytosol | 99.71 | 100.0 |
| CDX95336 | Canola | cytosol | 28.57 | 93.33 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 85.42 | 87.72 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 85.42 | 87.2 |
| AT3G52400.1 | Thale cress | cytosol | 83.38 | 83.87 |
| CDY70958 | Canola | cytosol | 66.47 | 68.47 |
| CDX73851 | Canola | cytosol | 66.47 | 68.26 |
| CDY01061 | Canola | cytosol, plastid | 65.89 | 67.46 |
| CDY08492 | Canola | cytosol | 65.89 | 66.67 |
| KRH32861 | Soybean | mitochondrion | 64.14 | 66.27 |
| KRH72169 | Soybean | cytosol | 64.14 | 65.67 |
| PGSC0003DMT400054965 | Potato | cytosol | 57.43 | 65.67 |
| Solyc01g006950.2.1 | Tomato | nucleus | 57.14 | 65.33 |
| Solyc10g081850.1.1 | Tomato | cytosol | 55.1 | 62.38 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 58.6 | 62.04 |
| PGSC0003DMT400072325 | Potato | cytosol | 54.52 | 61.92 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 47.52 | 59.49 |
| CDY21160 | Canola | cytosol | 22.16 | 57.14 |
| CDY34656 | Canola | cytosol | 48.98 | 56.38 |
| CDY51747 | Canola | cytosol | 22.16 | 56.3 |
| CDY20986 | Canola | cytosol | 48.69 | 56.04 |
| CDY19350 | Canola | cytosol | 48.4 | 55.7 |
| CDY34843 | Canola | cytosol | 48.4 | 55.7 |
| CDX97943 | Canola | cytosol | 48.4 | 55.7 |
| CDY70107 | Canola | cytosol | 48.4 | 55.7 |
| CDY50666 | Canola | cytosol | 21.87 | 55.56 |
| EER93336 | Sorghum | cytosol | 47.23 | 52.77 |
| Zm00001d034365_P001 | Maize | plasma membrane | 46.65 | 52.29 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 46.94 | 51.77 |
| Os03t0787000-01 | Rice | plasma membrane | 49.56 | 51.52 |
| CDY48554 | Canola | cytosol | 45.77 | 51.48 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 47.52 | 51.42 |
| CDY21958 | Canola | cytosol | 45.48 | 51.15 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 47.23 | 50.62 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 47.23 | 50.47 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 34.69 | 46.67 |
| CDY29963 | Canola | cytosol | 41.4 | 45.81 |
| CDY31137 | Canola | cytosol | 36.15 | 40.79 |
| CDX97497 | Canola | cytosol | 35.57 | 40.26 |
| CDX93553 | Canola | cytosol | 35.86 | 40.07 |
| CDX95050 | Canola | cytosol | 35.86 | 40.07 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 32.65 | 38.36 |
| CDY51748 | Canola | cytosol | 19.53 | 37.85 |
| Zm00001d013115_P001 | Maize | cytosol | 16.04 | 37.67 |
| CDY25157 | Canola | cytosol | 22.16 | 37.62 |
| CDY50665 | Canola | cytosol | 18.95 | 37.36 |
| CDY21161 | Canola | cytosol | 19.24 | 36.87 |
| CDY46302 | Canola | cytosol | 29.74 | 35.42 |
| CDY20921 | Canola | cytosol | 29.15 | 34.97 |
| CDY29223 | Canola | cytosol | 28.57 | 34.15 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 12.54 | 27.74 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078GDS8 | UniProt:A0A078GDS8 | EnsemblPlants:CDY23212 |
| ProteinID:CDY23212 | ProteinID:CDY23212.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00021754001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EE1C7F |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g05470DBnaA04g05470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDS8]
Coordinates
chrLK032141:-:391888..393358
Molecular Weight (calculated)
38647.9 Da
IEP (calculated)
9.070
GRAVY (calculated)
-0.666
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLLSRSFN RSVSDDSSPP HSHNIEMSKA KYSSGGSCRG GNNLDKFFLD VEEVNSDLKE LDRLCHSLQL SHEKSKTLHN AKAVKELKDK MDSDVSTALK
101: TAKRVKVNLK ELDRANEVNR SLPESGPGSS SDRQRTSVVN GLRKKLKDAM NNFMRVRETI STEYRDTINR LYFTVTGENP DEDTVDRLIS TGRESETFLQ
201: KAIQEQGRGR ILDTINEIQE RHDAVKDIEK SLNELHQVFL DMAVLVEHQG EQLEDIESHV KRANSLVRSG ADKLVKARFY QKNTRKWTCY AILLLIIIVV
301: LVVLFTVKPW EDNGGGGGGS TRQAAPVQAQ PPPPPALNRR LLR
101: TAKRVKVNLK ELDRANEVNR SLPESGPGSS SDRQRTSVVN GLRKKLKDAM NNFMRVRETI STEYRDTINR LYFTVTGENP DEDTVDRLIS TGRESETFLQ
201: KAIQEQGRGR ILDTINEIQE RHDAVKDIEK SLNELHQVFL DMAVLVEHQG EQLEDIESHV KRANSLVRSG ADKLVKARFY QKNTRKWTCY AILLLIIIVV
301: LVVLFTVKPW EDNGGGGGGS TRQAAPVQAQ PPPPPALNRR LLR
001: MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
Arabidopsis Description
SYP122Syntaxin-122 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.