CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53992	Canola	mitochondrion, plastid	100.0	100.0
CDY32767	Canola	mitochondrion, plastid	100.0	100.0
AT5G56670.1	Thale cress	mitochondrion, nucleus	62.24	98.39
TraesCS7D01G132800.1	Wheat	nucleus	48.98	96.0
TraesCS6B01G410000.1	Wheat	nucleus	47.96	95.92
TraesCS6D01G356300.1	Wheat	nucleus	47.96	95.92
CDY21649	Canola	mitochondrion, nucleus	61.22	95.24
PGSC0003DMT400006164	Potato	extracellular	60.2	95.16
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	60.2	95.16
Os06t0172600-00	Rice	nucleus	60.2	95.16
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	60.2	95.16
Os02t0804100-01	Rice	mitochondrion, nucleus	60.2	95.16
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	60.2	95.16
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	60.2	95.16
KRH57406	Soybean	mitochondrion, nucleus	60.2	95.16
Zm00001d018410_P001	Maize	plastid	60.2	95.16
EES07706	Sorghum	mitochondrion, nucleus	60.2	95.16
Zm00001d037479_P001	Maize	mitochondrion, nucleus	60.2	95.16
EER87936	Sorghum	mitochondrion, nucleus	60.2	95.16
TraesCS6A01G372200.1	Wheat	nucleus	44.9	93.62
Zm00001d045174_P001	Maize	plastid	59.18	93.55
TraesCS7B01G034200.1	Wheat	golgi	59.18	93.55
GSMUA_Achr6P35760_001	Banana	cytosol	23.47	92.0
CDX82719	Canola	cytosol, mitochondrion	60.2	89.39
CDY32875	Canola	nucleus, plastid	77.55	82.61
CDX88582	Canola	nucleus, plastid	72.45	82.56
CDY06811	Canola	cytosol	64.29	79.75
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	60.2	78.67
CDX81943	Canola	plastid	60.2	77.63
GSMUA_Achr4P08640_001	Banana	nucleus	32.65	76.19
CDY41797	Canola	plastid	78.57	70.64
CDY35885	Canola	cytosol	60.2	70.24
Zm00001d052003_P002	Maize	plastid	58.16	67.86
HORVU7Hr1G027760.1	Barley	plastid	61.22	65.22
CDY43497	Canola	nucleus	64.29	63.0
KRH28081	Soybean	cytosol, mitochondrion	47.96	62.67
GSMUA_Achr4P00880_001	Banana	nucleus	60.2	58.42
CDY20713	Canola	nucleus	69.39	58.12
KRH77363	Soybean	mitochondrion, nucleus	61.22	57.69

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078IVI6	UniProt:A0A078IVI6	ProteinID:CDY32767.1	EnsemblPlants:CDY42211	ProteinID:CDY42211
ProteinID:CDY42211.1	ProteinID:CDY53992.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00074423001	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI0004EDBC5B
SEG:seg	:	:	:	:	:

Description

BnaA01g25840D40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:A0A078IVI6]

Coordinates

chrLK032518:-:117682..118590

Molecular Weight (calculated)

11072.8 Da

IEP (calculated)

12.421

GRAVY (calculated)

-1.051

Length

98 amino acids

Sequence
(BLAST)

1: MKKLFKCKAQ HISLLNYALV SGYCSRRKRK QRSKSAMGKV HGSLARAGKV RGQTAKVAKQ DKKKKPRGRA HKRLQHNRRF VTAVVGFGKK RGPNSSEK

Best Arabidopsis Sequence Match ( AT2G19750.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.