CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57406	Soybean	mitochondrion, nucleus	58.65	98.39
TraesCS7D01G132800.1	Wheat	nucleus	46.15	96.0
TraesCS6D01G356300.1	Wheat	nucleus	45.19	95.92
TraesCS6B01G410000.1	Wheat	nucleus	45.19	95.92
CDY21649	Canola	mitochondrion, nucleus	57.69	95.24
AT4G29390.1	Thale cress	mitochondrion, nucleus	56.73	95.16
AT5G56670.1	Thale cress	mitochondrion, nucleus	56.73	95.16
AT2G19750.1	Thale cress	mitochondrion, nucleus	56.73	95.16
TraesCS7B01G034200.1	Wheat	golgi	56.73	95.16
TraesCS6A01G372200.1	Wheat	nucleus	42.31	93.62
CDX82719	Canola	cytosol, mitochondrion	55.77	87.88
CDX81943	Canola	plastid	56.73	77.63
CDY06811	Canola	cytosol	56.73	74.68
CDY35885	Canola	cytosol	57.69	71.43
Zm00001d052003_P002	Maize	plastid	56.73	70.24
CDX88582	Canola	nucleus, plastid	56.73	68.6
HORVU7Hr1G027760.1	Barley	plastid	59.62	67.39
CDY32875	Canola	nucleus, plastid	58.65	66.3
KRH28081	Soybean	cytosol, mitochondrion	47.12	65.33
CDY41797	Canola	plastid	64.42	61.47
CDY53992	Canola	mitochondrion, plastid	57.69	61.22
CDY42211	Canola	mitochondrion, plastid	57.69	61.22
CDY32767	Canola	mitochondrion, plastid	57.69	61.22
CDY43497	Canola	nucleus	56.73	59.0
CDY20713	Canola	nucleus	59.62	52.99

Protein Annotations

MapMan:17.1.3.1.32	EMBL:ACUP02000669	EnsemblPlantsGene:GLYMA_01G209400	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
UniProt:I1J9W0	EnsemblPlants:KRH77363	ProteinID:KRH77363	ProteinID:KRH77363.1	PFAM:PF04758	PANTHER:PTHR12650
PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI0002955A83	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:54102298..54103188

Molecular Weight (calculated)

11629.2 Da

IEP (calculated)

12.586

GRAVY (calculated)

-1.112

Length

104 amino acids

Sequence
(BLAST)

001: MKITAILIAK THSRSRSVRA AAASDRSEKR EIHRRSNHGT QFAGKVHGSL ARAGKVRGQT PKVAKQDKKK KPRGRAHKRM QYNRRFVTAV VGFGKKRGPN
101: SSEK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.