CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G19750.1	Thale cress	mitochondrion, nucleus	90.91	96.77
CDY21649	Canola	mitochondrion, nucleus	90.91	95.24
TraesCS7D01G132800.1	Wheat	nucleus	71.21	94.0
TraesCS6B01G410000.1	Wheat	nucleus	69.7	93.88
TraesCS6D01G356300.1	Wheat	nucleus	69.7	93.88
EER87936	Sorghum	mitochondrion, nucleus	87.88	93.55
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	87.88	93.55
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	87.88	93.55
PGSC0003DMT400006164	Potato	extracellular	87.88	93.55
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	87.88	93.55
Os06t0172600-00	Rice	nucleus	87.88	93.55
Os02t0804100-01	Rice	mitochondrion, nucleus	87.88	93.55
KRH57406	Soybean	mitochondrion, nucleus	87.88	93.55
EES07706	Sorghum	mitochondrion, nucleus	87.88	93.55
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	87.88	93.55
Zm00001d018410_P001	Maize	plastid	87.88	93.55
Zm00001d037479_P001	Maize	mitochondrion, nucleus	87.88	93.55
GSMUA_Achr6P35760_001	Banana	cytosol	34.85	92.0
TraesCS7B01G034200.1	Wheat	golgi	86.36	91.94
Zm00001d045174_P001	Maize	plastid	86.36	91.94
TraesCS6A01G372200.1	Wheat	nucleus	65.15	91.49
CDX81943	Canola	plastid	92.42	80.26
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	87.88	77.33
GSMUA_Achr4P08640_001	Banana	nucleus	48.48	76.19
CDY06811	Canola	cytosol	90.91	75.95
CDY35885	Canola	cytosol	90.91	71.43
Bra031096.1-P	Field mustard	cytosol, plastid	86.36	71.25
CDX88582	Canola	nucleus, plastid	90.91	69.77
Zm00001d052003_P002	Maize	plastid	86.36	67.86
CDY32875	Canola	nucleus, plastid	90.91	65.22
HORVU7Hr1G027760.1	Barley	plastid	86.36	61.96
KRH28081	Soybean	cytosol, mitochondrion	69.7	61.33
CDY53992	Canola	mitochondrion, plastid	89.39	60.2
CDY42211	Canola	mitochondrion, plastid	89.39	60.2
CDY32767	Canola	mitochondrion, plastid	89.39	60.2
CDY43497	Canola	nucleus	90.91	60.0
KRH77363	Soybean	mitochondrion, nucleus	87.88	55.77
CDY41797	Canola	plastid	90.91	55.05
GSMUA_Achr4P00880_001	Banana	nucleus	83.33	54.46
CDY20713	Canola	nucleus	90.91	51.28

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078D375	EnsemblPlants:CDX82719	ProteinID:CDX82719	ProteinID:CDX82719.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00137991001	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30
UniParc:UPI0004EEC460	SEG:seg	:	:	:	:

Description

BnaC07g01470D

Coordinates

chrLK031829:+:1606794..1608006

Molecular Weight (calculated)

7443.3 Da

IEP (calculated)

12.753

GRAVY (calculated)

-1.039

Length

66 amino acids

Sequence
(BLAST)

1: MLLISWKVHG SLARAGKVRG QTPKVAKQDK KKKPRGRAHK RLQHNRRFVT AVVGFGKKRG PNSSEK

Best Arabidopsis Sequence Match ( AT2G19750.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.