CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56670.1	Thale cress	mitochondrion, nucleus	52.99	100.0
TraesCS7D01G132800.1	Wheat	nucleus	41.88	98.0
TraesCS6B01G410000.1	Wheat	nucleus	41.03	97.96
TraesCS6D01G356300.1	Wheat	nucleus	41.03	97.96
CDY21649	Canola	mitochondrion, nucleus	52.14	96.83
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	51.28	96.77
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	51.28	96.77
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	51.28	96.77
PGSC0003DMT400006164	Potato	extracellular	51.28	96.77
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	51.28	96.77
Os06t0172600-00	Rice	nucleus	51.28	96.77
Os02t0804100-01	Rice	mitochondrion, nucleus	51.28	96.77
KRH57406	Soybean	mitochondrion, nucleus	51.28	96.77
EES07706	Sorghum	mitochondrion, nucleus	51.28	96.77
EER87936	Sorghum	mitochondrion, nucleus	51.28	96.77
Zm00001d018410_P001	Maize	plastid	51.28	96.77
Zm00001d037479_P001	Maize	mitochondrion, nucleus	51.28	96.77
TraesCS6A01G372200.1	Wheat	nucleus	38.46	95.74
TraesCS7B01G034200.1	Wheat	golgi	50.43	95.16
Zm00001d045174_P001	Maize	plastid	50.43	95.16
GSMUA_Achr6P35760_001	Banana	cytosol	19.66	92.0
CDX82719	Canola	cytosol, mitochondrion	51.28	90.91
CDX81943	Canola	plastid	52.14	80.26
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	51.28	80.0
CDY06811	Canola	cytosol	53.85	79.75
CDX88582	Canola	nucleus, plastid	58.12	79.07
GSMUA_Achr4P08640_001	Banana	nucleus	27.35	76.19
CDY32875	Canola	nucleus, plastid	58.12	73.91
CDY35885	Canola	cytosol	52.14	72.62
Zm00001d052003_P002	Maize	plastid	50.43	70.24
CDY53992	Canola	mitochondrion, plastid	58.12	69.39
CDY42211	Canola	mitochondrion, plastid	58.12	69.39
CDY32767	Canola	mitochondrion, plastid	58.12	69.39
HORVU7Hr1G027760.1	Barley	plastid	52.99	67.39
CDY41797	Canola	plastid	60.68	65.14
KRH28081	Soybean	cytosol, mitochondrion	41.03	64.0
CDY43497	Canola	nucleus	54.7	64.0
KRH77363	Soybean	mitochondrion, nucleus	52.99	59.62
GSMUA_Achr4P00880_001	Banana	nucleus	50.43	58.42

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078G7U7	UniProt:A0A078G7U7	EnsemblPlants:CDY20713	ProteinID:CDY20713	ProteinID:CDY20713.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00012919001	PFAM:PF04758	PANTHER:PTHR12650
PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI0004EEE48A	SEG:seg	:	:

Description

BnaA02g08530D40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:A0A078G7U7]

Coordinates

chrLK032111:+:210624..211589

Molecular Weight (calculated)

13313.7 Da

IEP (calculated)

12.266

GRAVY (calculated)

-0.883

Length

117 amino acids

Sequence
(BLAST)

001: MLLLYYVKMR NTKHIPKIDQ ITNLHKFMIV MGLTHNSKSL KYGSRPNKLQ QAKTAMGKVH GSLARAGKVR GQTPKVAKQD KKKKPRGRAH KRLQHNRRFV
101: TAVVGFGKKR GPNSSEK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.