CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56670.1	Thale cress	mitochondrion, nucleus	56.88	100.0
TraesCS7D01G132800.1	Wheat	nucleus	44.95	98.0
TraesCS6D01G356300.1	Wheat	nucleus	44.04	97.96
TraesCS6B01G410000.1	Wheat	nucleus	44.04	97.96
CDY21649	Canola	mitochondrion, nucleus	55.96	96.83
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	55.05	96.77
PGSC0003DMT400006164	Potato	extracellular	55.05	96.77
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	55.05	96.77
Os06t0172600-00	Rice	nucleus	55.05	96.77
Os02t0804100-01	Rice	mitochondrion, nucleus	55.05	96.77
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	55.05	96.77
KRH57406	Soybean	mitochondrion, nucleus	55.05	96.77
Zm00001d018410_P001	Maize	plastid	55.05	96.77
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	55.05	96.77
Zm00001d037479_P001	Maize	mitochondrion, nucleus	55.05	96.77
EES07706	Sorghum	mitochondrion, nucleus	55.05	96.77
EER87936	Sorghum	mitochondrion, nucleus	55.05	96.77
TraesCS6A01G372200.1	Wheat	nucleus	41.28	95.74
Zm00001d045174_P001	Maize	plastid	54.13	95.16
TraesCS7B01G034200.1	Wheat	golgi	54.13	95.16
GSMUA_Achr6P35760_001	Banana	cytosol	21.1	92.0
CDX82719	Canola	cytosol, mitochondrion	55.05	90.91
CDY32875	Canola	nucleus, plastid	69.72	82.61
CDX88582	Canola	nucleus, plastid	65.14	82.56
CDY06811	Canola	cytosol	59.63	82.28
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	55.05	80.0
CDX81943	Canola	plastid	55.05	78.95
CDY53992	Canola	mitochondrion, plastid	70.64	78.57
CDY42211	Canola	mitochondrion, plastid	70.64	78.57
CDY32767	Canola	mitochondrion, plastid	70.64	78.57
GSMUA_Achr4P08640_001	Banana	nucleus	29.36	76.19
CDY35885	Canola	cytosol	55.05	71.43
Zm00001d052003_P002	Maize	plastid	53.21	69.05
HORVU7Hr1G027760.1	Barley	plastid	56.88	67.39
KRH77363	Soybean	mitochondrion, nucleus	61.47	64.42
KRH28081	Soybean	cytosol, mitochondrion	44.04	64.0
CDY43497	Canola	nucleus	58.72	64.0
GSMUA_Achr4P00880_001	Banana	nucleus	57.8	62.38
CDY20713	Canola	nucleus	65.14	60.68

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078HVD7	UniProt:A0A078HVD7	EnsemblPlants:CDY41797	ProteinID:CDY41797	ProteinID:CDY41797.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00073690001	PFAM:PF04758	PANTHER:PTHR12650
PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI0004EE2A7A	SEG:seg	:	:

Description

BnaC02g12080D40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:A0A078HVD7]

Coordinates

chrLK032507:+:31153..37031

Molecular Weight (calculated)

11821.4 Da

IEP (calculated)

12.542

GRAVY (calculated)

-0.891

Length

109 amino acids

Sequence
(BLAST)

001: MPSGPGAFSG CIINKASLTS FSVASLSNSP VSAYCSRRKR KQRSKSTMGK VHGSLARAGK VRGQTPKVAK QDKKKKPRGR AHKRLQHNRR FVTAVVGFGK
101: KRGPNSSEK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.