Factsheet for Zm00001d045174_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35760_001	Banana	cytosol	40.32	100.0
Zm00001d037479_P001	Maize	mitochondrion, nucleus	98.39	98.39
Zm00001d018410_P001	Maize	plastid	98.39	98.39
TraesCS7D01G132800.1	Wheat	nucleus	79.03	98.0
TraesCS6B01G410000.1	Wheat	nucleus	77.42	97.96
TraesCS6D01G356300.1	Wheat	nucleus	77.42	97.96
TraesCS6A01G372200.1	Wheat	nucleus	72.58	95.74
AT4G29390.1	Thale cress	mitochondrion, nucleus	95.16	95.16
AT5G56670.1	Thale cress	mitochondrion, nucleus	95.16	95.16
AT2G19750.1	Thale cress	mitochondrion, nucleus	95.16	95.16
TraesCS7B01G034200.1	Wheat	golgi	95.16	95.16
CDY21649	Canola	mitochondrion, nucleus	93.55	92.06
CDX82719	Canola	cytosol, mitochondrion	91.94	86.36
GSMUA_Achr4P08640_001	Banana	nucleus	54.84	80.95
CDX81943	Canola	plastid	91.94	75.0
CDY06811	Canola	cytosol	95.16	74.68
Zm00001d052003_P002	Maize	plastid	96.77	71.43
CDX88582	Canola	nucleus, plastid	95.16	68.6
CDY35885	Canola	cytosol	91.94	67.86
HORVU7Hr1G027760.1	Barley	plastid	95.16	64.13
CDY32875	Canola	nucleus, plastid	95.16	64.13
CDY53992	Canola	mitochondrion, plastid	93.55	59.18
CDY42211	Canola	mitochondrion, plastid	93.55	59.18
CDY32767	Canola	mitochondrion, plastid	93.55	59.18
CDY43497	Canola	nucleus	95.16	59.0
GSMUA_Achr4P00880_001	Banana	nucleus	93.55	57.43
CDY41797	Canola	plastid	95.16	54.13
CDY20713	Canola	nucleus	95.16	50.43

Protein Annotations

EntrezGene:100281980	EntrezGene:100284182	MapMan:17.1.3.1.32	ProteinID:AQL01716.1	UniProt:B6SRJ3	EMBL:EU955358
EMBL:EU959026	EMBL:EU959157	EMBL:EU967413	EMBL:EU973037	EMBL:EU975505	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30
UniParc:UPI000182B320	EnsemblPlantsGene:Zm00001d045174	EnsemblPlants:Zm00001d045174_P001	EnsemblPlants:Zm00001d045174_T001	SEG:seg	:

Description

40S ribosomal protein S30

Coordinates

chr9:-:15127211..15128029

Molecular Weight (calculated)

6957.6 Da

IEP (calculated)

12.355

GRAVY (calculated)

-1.250

Length

62 amino acids

Sequence
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAYKRMQY NRRFVTAVVG FGKKRGPNSS EK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.