Factsheet for GSMUA_Achr4P00880_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35760_001	Banana	cytosol	23.76	96.0
Zm00001d045174_P001	Maize	plastid	57.43	93.55
TraesCS7D01G132800.1	Wheat	nucleus	45.54	92.0
EES07706	Sorghum	mitochondrion, nucleus	56.44	91.94
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	56.44	91.94
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	56.44	91.94
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	56.44	91.94
PGSC0003DMT400006164	Potato	extracellular	56.44	91.94
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	56.44	91.94
Os06t0172600-00	Rice	nucleus	56.44	91.94
Os02t0804100-01	Rice	mitochondrion, nucleus	56.44	91.94
AT2G19750.1	Thale cress	mitochondrion, nucleus	56.44	91.94
EER87936	Sorghum	mitochondrion, nucleus	56.44	91.94
AT4G29390.1	Thale cress	mitochondrion, nucleus	56.44	91.94
AT5G56670.1	Thale cress	mitochondrion, nucleus	56.44	91.94
TraesCS6D01G356300.1	Wheat	nucleus	44.55	91.84
TraesCS6B01G410000.1	Wheat	nucleus	44.55	91.84
TraesCS6A01G372200.1	Wheat	nucleus	41.58	89.36
CDY21649	Canola	mitochondrion, nucleus	55.45	88.89
TraesCS7B01G034200.1	Wheat	golgi	54.46	88.71
CDX82719	Canola	cytosol, mitochondrion	54.46	83.33
GSMUA_Achr4P08640_001	Banana	nucleus	33.66	80.95
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	56.44	76.0
CDY06811	Canola	cytosol	57.43	73.42
CDX81943	Canola	plastid	54.46	72.37
CDX88582	Canola	nucleus, plastid	57.43	67.44
CDY35885	Canola	cytosol	55.45	66.67
HORVU7Hr1G027760.1	Barley	plastid	57.43	63.04
CDY32875	Canola	nucleus, plastid	57.43	63.04
CDY32767	Canola	mitochondrion, plastid	58.42	60.2
CDY53992	Canola	mitochondrion, plastid	58.42	60.2
CDY42211	Canola	mitochondrion, plastid	58.42	60.2
CDY43497	Canola	nucleus	57.43	58.0
CDY41797	Canola	plastid	62.38	57.8
CDY20713	Canola	nucleus	58.42	50.43
Bra039017.1-P	Field mustard	mitochondrion	43.56	45.36

Protein Annotations

MapMan:17.1.3.1.32	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr4G00880_001	EnsemblPlants:GSMUA_Achr4P00880_001
EnsemblPlants:GSMUA_Achr4T00880_001	UniProt:M0SK05	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30
UniParc:UPI0002966844	:	:	:	:	:

Description

40S ribosomal protein S30 [Source:GMGC_GENE;Acc:GSMUA_Achr4G00880_001]

Coordinates

chr4:+:737811..739288

Molecular Weight (calculated)

11347.8 Da

IEP (calculated)

11.848

GRAVY (calculated)

-1.032

Length

101 amino acids

Sequence
(BLAST)

001: MFFKICDYKN PNRSCFVSIS LPRSPVRRKP LDGEADSSTM GKVHGSLARA GKVRGQTPKQ AKTDKPKKPR GRAYKRMQHN RRFVTAVVGF GKKRGPNSSE
101: K

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.