Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, unclear
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| unclear:
26455813
endoplasmic reticulum: 29145071 |
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018410_P001 | Maize | plastid | 100.0 | 100.0 |
| Solyc08g076340.2.1 | Tomato | mitochondrion, nucleus | 100.0 | 100.0 |
| Os06t0172600-00 | Rice | nucleus | 100.0 | 100.0 |
| GSMUA_Achr6P35760_001 | Banana | cytosol | 40.32 | 100.0 |
| TraesCS7D01G132800.1 | Wheat | nucleus | 79.03 | 98.0 |
| TraesCS6D01G356300.1 | Wheat | nucleus | 77.42 | 97.96 |
| TraesCS6B01G410000.1 | Wheat | nucleus | 77.42 | 97.96 |
| AT4G29390.1 | Thale cress | mitochondrion, nucleus | 96.77 | 96.77 |
| TraesCS7B01G034200.1 | Wheat | golgi | 96.77 | 96.77 |
| AT2G19750.1 | Thale cress | mitochondrion, nucleus | 96.77 | 96.77 |
| AT5G56670.1 | Thale cress | mitochondrion, nucleus | 96.77 | 96.77 |
| TraesCS6A01G372200.1 | Wheat | nucleus | 72.58 | 95.74 |
| CDY21649 | Canola | mitochondrion, nucleus | 95.16 | 93.65 |
| CDX82719 | Canola | cytosol, mitochondrion | 93.55 | 87.88 |
| GSMUA_Achr4P08640_001 | Banana | nucleus | 54.84 | 80.95 |
| CDX81943 | Canola | plastid | 93.55 | 76.32 |
| CDY06811 | Canola | cytosol | 96.77 | 75.95 |
| CDX88582 | Canola | nucleus, plastid | 96.77 | 69.77 |
| CDY35885 | Canola | cytosol | 93.55 | 69.05 |
| KRH28081 | Soybean | cytosol, mitochondrion | 80.65 | 66.67 |
| CDY32875 | Canola | nucleus, plastid | 96.77 | 65.22 |
| HORVU7Hr1G027760.1 | Barley | plastid | 96.77 | 65.22 |
| CDY32767 | Canola | mitochondrion, plastid | 95.16 | 60.2 |
| CDY53992 | Canola | mitochondrion, plastid | 95.16 | 60.2 |
| CDY42211 | Canola | mitochondrion, plastid | 95.16 | 60.2 |
| CDY43497 | Canola | nucleus | 96.77 | 60.0 |
| GSMUA_Achr4P00880_001 | Banana | nucleus | 91.94 | 56.44 |
| CDY41797 | Canola | plastid | 96.77 | 55.05 |
| CDY20713 | Canola | nucleus | 96.77 | 51.28 |
| Bra039017.1-P | Field mustard | mitochondrion | 75.81 | 48.45 |
Protein Annotations
| MapMan:17.1.3.1.32 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | UniProt:K4DBV8 | PFAM:PF04758 |
| PANTHER:PTHR12650 | PANTHER:PTHR12650:SF15 | InterPro:Ribosomal_S30 | EnsemblPlantsGene:Solyc12g008700.1 | EnsemblPlants:Solyc12g008700.1.1 | UniParc:UPI0000375862 |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:K4DBV8]
Coordinates
chr12:-:2070165..2071739
Molecular Weight (calculated)
6931.6 Da
IEP (calculated)
12.547
GRAVY (calculated)
-1.281
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRMQY NRRFVTAVVG FGKKRGPNSS EK
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK
Arabidopsis Description
RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.