Factsheet for Zm00001d018410_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037479_P001	Maize	mitochondrion, nucleus	100.0	100.0
Os06t0172600-00	Rice	nucleus	100.0	100.0
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	100.0	100.0
Zm00001d045174_P001	Maize	plastid	98.39	98.39
TraesCS7D01G132800.1	Wheat	nucleus	79.03	98.0
TraesCS6D01G356300.1	Wheat	nucleus	77.42	97.96
TraesCS6B01G410000.1	Wheat	nucleus	77.42	97.96
AT2G19750.1	Thale cress	mitochondrion, nucleus	96.77	96.77
TraesCS7B01G034200.1	Wheat	golgi	96.77	96.77
AT5G56670.1	Thale cress	mitochondrion, nucleus	96.77	96.77
AT4G29390.1	Thale cress	mitochondrion, nucleus	96.77	96.77
TraesCS6A01G372200.1	Wheat	nucleus	72.58	95.74
CDY21649	Canola	mitochondrion, nucleus	95.16	93.65
CDX82719	Canola	cytosol, mitochondrion	93.55	87.88
CDX81943	Canola	plastid	93.55	76.32
CDY06811	Canola	cytosol	96.77	75.95
Zm00001d052003_P002	Maize	plastid	95.16	70.24
CDX88582	Canola	nucleus, plastid	96.77	69.77
CDY35885	Canola	cytosol	93.55	69.05
KRH28081	Soybean	cytosol, mitochondrion	80.65	66.67
HORVU7Hr1G027760.1	Barley	plastid	96.77	65.22
CDY32875	Canola	nucleus, plastid	96.77	65.22
CDY53992	Canola	mitochondrion, plastid	95.16	60.2
CDY42211	Canola	mitochondrion, plastid	95.16	60.2
CDY32767	Canola	mitochondrion, plastid	95.16	60.2
CDY43497	Canola	nucleus	96.77	60.0
CDY41797	Canola	plastid	96.77	55.05
CDY20713	Canola	nucleus	96.77	51.28
Bra039017.1-P	Field mustard	mitochondrion	75.81	48.45

Protein Annotations

EntrezGene:100282946	MapMan:17.1.3.1.32	ProteinID:AQK75890.1	ProteinID:AQK84073.1	UniProt:B6SLI1	EMBL:EU953596
EMBL:EU954717	EMBL:EU957789	EMBL:EU958707	EMBL:EU958944	EMBL:EU959352	EMBL:EU962903
EMBL:EU967282	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	PFAM:PF04758	PANTHER:PTHR12650
PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI0000375862	EnsemblPlantsGene:Zm00001d018410	EnsemblPlants:Zm00001d018410_P001	EnsemblPlants:Zm00001d018410_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S30

Coordinates

chr5:-:220246585..220247259

Molecular Weight (calculated)

6931.6 Da

IEP (calculated)

12.547

GRAVY (calculated)

-1.281

Length

62 amino acids

Sequence
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRMQY NRRFVTAVVG FGKKRGPNSS EK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.