Factsheet for TraesCS7B01G034200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
nucleus 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G410000.1	Wheat	nucleus	79.03	100.0
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	96.77	96.77
Os02t0804100-01	Rice	mitochondrion, nucleus	96.77	96.77
KRH57406	Soybean	mitochondrion, nucleus	96.77	96.77
Os06t0172600-00	Rice	nucleus	96.77	96.77
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	96.77	96.77
PGSC0003DMT400006164	Potato	extracellular	96.77	96.77
EES07706	Sorghum	mitochondrion, nucleus	96.77	96.77
EER87936	Sorghum	mitochondrion, nucleus	96.77	96.77
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	96.77	96.77
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	96.77	96.77
Zm00001d018410_P001	Maize	plastid	96.77	96.77
Zm00001d037479_P001	Maize	mitochondrion, nucleus	96.77	96.77
GSMUA_Achr6P35760_001	Banana	cytosol	38.71	96.0
Zm00001d045174_P001	Maize	plastid	95.16	95.16
AT2G19750.1	Thale cress	mitochondrion, nucleus	95.16	95.16
AT5G56670.1	Thale cress	mitochondrion, nucleus	95.16	95.16
AT4G29390.1	Thale cress	mitochondrion, nucleus	95.16	95.16
CDY21649	Canola	mitochondrion, nucleus	93.55	92.06
CDX82719	Canola	cytosol, mitochondrion	91.94	86.36
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	96.77	80.0
GSMUA_Achr4P08640_001	Banana	nucleus	53.23	78.57
CDX81943	Canola	plastid	91.94	75.0
CDY06811	Canola	cytosol	95.16	74.68
CDX88582	Canola	nucleus, plastid	95.16	68.6
Zm00001d052003_P002	Maize	plastid	91.94	67.86
CDY35885	Canola	cytosol	91.94	67.86
Bra031096.1-P	Field mustard	cytosol, plastid	87.1	67.5
HORVU7Hr1G027760.1	Barley	plastid	100.0	67.39
CDY32875	Canola	nucleus, plastid	95.16	64.13
KRH28081	Soybean	cytosol, mitochondrion	77.42	64.0
CDY53992	Canola	mitochondrion, plastid	93.55	59.18
CDY42211	Canola	mitochondrion, plastid	93.55	59.18
CDY32767	Canola	mitochondrion, plastid	93.55	59.18
CDY43497	Canola	nucleus	95.16	59.0
KRH77363	Soybean	mitochondrion, nucleus	95.16	56.73
GSMUA_Achr4P00880_001	Banana	nucleus	88.71	54.46
CDY41797	Canola	plastid	95.16	54.13
CDY20713	Canola	nucleus	95.16	50.43

Protein Annotations

EnsemblPlants:TraesCS7B01G034200.1	EnsemblPlantsGene:TraesCS7B01G034200	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:Ribosomal_S30	PANTHER:PTHR12650
PANTHER:PTHR12650:SF15	PFAM:PF04758	MapMan:17.1.3.1.32	:	:	:

Description

No Description!

Coordinates

chr7B:+:33805335..33805613

Molecular Weight (calculated)

6913.5 Da

IEP (calculated)

12.543

GRAVY (calculated)

-1.232

Length

62 amino acids

Sequence
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKQP RGRAHKRIQY NRRFVTAVVG FGKKRGPNSS EK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.