Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 3
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G19750.1 | Thale cress | mitochondrion, nucleus | 71.25 | 91.94 |
| CDY21649 | Canola | mitochondrion, nucleus | 71.25 | 90.48 |
| TraesCS7D01G132800.1 | Wheat | nucleus | 55.0 | 88.0 |
| TraesCS6B01G410000.1 | Wheat | nucleus | 53.75 | 87.76 |
| TraesCS6D01G356300.1 | Wheat | nucleus | 53.75 | 87.76 |
| TraesCS7B01G034200.1 | Wheat | golgi | 67.5 | 87.1 |
| CDX82719 | Canola | cytosol, mitochondrion | 71.25 | 86.36 |
| TraesCS6A01G372200.1 | Wheat | nucleus | 50.0 | 85.11 |
| CDX81943 | Canola | plastid | 73.75 | 77.63 |
| CDY35885 | Canola | cytosol | 75.0 | 71.43 |
| HORVU7Hr1G027760.1 | Barley | plastid | 72.5 | 63.04 |
| Bra039017.1-P | Field mustard | mitochondrion | 55.0 | 45.36 |
Protein Annotations
| MapMan:17.1.3.1.32 | EnsemblPlantsGene:Bra031096 | EnsemblPlants:Bra031096.1 | EnsemblPlants:Bra031096.1-P | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | UniProt:M4EQM5 |
| PFAM:PF04758 | PANTHER:PTHR12650 | PANTHER:PTHR12650:SF15 | InterPro:Ribosomal_S30 | UniParc:UPI00025429D2 | SEG:seg |
Description
AT4G29390 (E=5e-021) | 40S ribosomal protein S30 (RPS30B)
Coordinates
chrA09:-:32501646..32502518
Molecular Weight (calculated)
8901.9 Da
IEP (calculated)
12.703
GRAVY (calculated)
-1.077
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MFNIASSSPP VKPRRFTVIN HGEGSLARAG KVRGQTPKVA KQDKKKKPRG RAHKRLQHNR RFVTAVVGFG KKRGPNSSEK
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK
Arabidopsis Description
RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.