CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G19750.1	Thale cress	mitochondrion, nucleus	96.83	98.39
TraesCS7D01G132800.1	Wheat	nucleus	76.19	96.0
TraesCS6B01G410000.1	Wheat	nucleus	74.6	95.92
TraesCS6D01G356300.1	Wheat	nucleus	74.6	95.92
EER87936	Sorghum	mitochondrion, nucleus	93.65	95.16
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	93.65	95.16
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	93.65	95.16
PGSC0003DMT400006164	Potato	extracellular	93.65	95.16
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	93.65	95.16
Os06t0172600-00	Rice	nucleus	93.65	95.16
Os02t0804100-01	Rice	mitochondrion, nucleus	93.65	95.16
KRH57406	Soybean	mitochondrion, nucleus	93.65	95.16
EES07706	Sorghum	mitochondrion, nucleus	93.65	95.16
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	93.65	95.16
Zm00001d018410_P001	Maize	plastid	93.65	95.16
Zm00001d037479_P001	Maize	mitochondrion, nucleus	93.65	95.16
TraesCS6A01G372200.1	Wheat	nucleus	69.84	93.62
TraesCS7B01G034200.1	Wheat	golgi	92.06	93.55
Zm00001d045174_P001	Maize	plastid	92.06	93.55
GSMUA_Achr6P35760_001	Banana	cytosol	36.51	92.0
CDX82719	Canola	cytosol, mitochondrion	95.24	90.91
CDX81943	Canola	plastid	95.24	78.95
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	93.65	78.67
CDY06811	Canola	cytosol	96.83	77.22
GSMUA_Achr4P08640_001	Banana	nucleus	50.79	76.19
CDY35885	Canola	cytosol	95.24	71.43
Bra031096.1-P	Field mustard	cytosol, plastid	90.48	71.25
CDX88582	Canola	nucleus, plastid	96.83	70.93
Zm00001d052003_P002	Maize	plastid	90.48	67.86
CDY32875	Canola	nucleus, plastid	96.83	66.3
HORVU7Hr1G027760.1	Barley	plastid	92.06	63.04
KRH28081	Soybean	cytosol, mitochondrion	74.6	62.67
CDY53992	Canola	mitochondrion, plastid	95.24	61.22
CDY42211	Canola	mitochondrion, plastid	95.24	61.22
CDY32767	Canola	mitochondrion, plastid	95.24	61.22
CDY43497	Canola	nucleus	96.83	61.0
KRH77363	Soybean	mitochondrion, nucleus	95.24	57.69
CDY41797	Canola	plastid	96.83	55.96
GSMUA_Achr4P00880_001	Banana	nucleus	88.89	55.45
CDY20713	Canola	nucleus	96.83	52.14

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078G8C1	UniProt:A0A078G8C1	EnsemblPlants:CDY21649	ProteinID:CDY21649	ProteinID:CDY21649.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00016133001	PFAM:PF04758	PANTHER:PTHR12650
PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI0004EF47A1	SEG:seg	:	:

Description

BnaA09g44000D40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:A0A078G8C1]

Coordinates

chrLK032123:-:6740..7795

Molecular Weight (calculated)

6958.6 Da

IEP (calculated)

12.753

GRAVY (calculated)

-1.232

Length

63 amino acids

Sequence
(BLAST)

1: MAGKVHGSLA RAGKVRGQTP KVAKQDKKKK PRGRAHKRLQ HNRRFVTAVV GFGKKRGPNS SEK

Best Arabidopsis Sequence Match ( AT2G19750.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.