CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G29390.1	Thale cress	mitochondrion, nucleus	78.48	100.0
TraesCS7D01G132800.1	Wheat	nucleus	62.03	98.0
TraesCS6D01G356300.1	Wheat	nucleus	60.76	97.96
TraesCS6B01G410000.1	Wheat	nucleus	60.76	97.96
CDY21649	Canola	mitochondrion, nucleus	77.22	96.83
Zm00001d037479_P001	Maize	mitochondrion, nucleus	75.95	96.77
KRH57406	Soybean	mitochondrion, nucleus	75.95	96.77
EES07706	Sorghum	mitochondrion, nucleus	75.95	96.77
EER87936	Sorghum	mitochondrion, nucleus	75.95	96.77
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	75.95	96.77
Zm00001d018410_P001	Maize	plastid	75.95	96.77
Os02t0804100-01	Rice	mitochondrion, nucleus	75.95	96.77
Os06t0172600-00	Rice	nucleus	75.95	96.77
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	75.95	96.77
PGSC0003DMT400006164	Potato	extracellular	75.95	96.77
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	75.95	96.77
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	75.95	96.77
TraesCS6A01G372200.1	Wheat	nucleus	56.96	95.74
TraesCS7B01G034200.1	Wheat	golgi	74.68	95.16
Zm00001d045174_P001	Maize	plastid	74.68	95.16
GSMUA_Achr6P35760_001	Banana	cytosol	29.11	92.0
CDX82719	Canola	cytosol, mitochondrion	75.95	90.91
CDX81943	Canola	plastid	77.22	80.26
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	75.95	80.0
GSMUA_Achr4P08640_001	Banana	nucleus	40.51	76.19
CDX88582	Canola	nucleus, plastid	82.28	75.58
CDY35885	Canola	cytosol	77.22	72.62
CDY32875	Canola	nucleus, plastid	81.01	69.57
Zm00001d052003_P002	Maize	plastid	73.42	69.05
CDY43497	Canola	nucleus	86.08	68.0
CDY53992	Canola	mitochondrion, plastid	79.75	64.29
CDY42211	Canola	mitochondrion, plastid	79.75	64.29
CDY32767	Canola	mitochondrion, plastid	79.75	64.29
HORVU7Hr1G027760.1	Barley	plastid	74.68	64.13
KRH28081	Soybean	cytosol, mitochondrion	60.76	64.0
CDY41797	Canola	plastid	82.28	59.63
GSMUA_Achr4P00880_001	Banana	nucleus	73.42	57.43
KRH77363	Soybean	mitochondrion, nucleus	74.68	56.73
CDY20713	Canola	nucleus	79.75	53.85

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078F075	EnsemblPlants:CDY06811	ProteinID:CDY06811	ProteinID:CDY06811.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00123053001	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15
InterPro:Ribosomal_S30	UniParc:UPI0004EF424A	SEG:seg	:	:	:

Description

BnaC01g09100D

Coordinates

chrLK031973:+:410919..411937

Molecular Weight (calculated)

8681.7 Da

IEP (calculated)

12.540

GRAVY (calculated)

-1.110

Length

79 amino acids

Sequence
(BLAST)

1: MGRMSTDRSA DSVVKATMGK VHGSLARAGK VRGQTPKVAK QDKKKKPRGR AHKRLQHNRR FVTAVVGFGK KRGPNSSEK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.