Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G29390.1 | Thale cress | mitochondrion, nucleus | 62.0 | 100.0 |
| TraesCS7D01G132800.1 | Wheat | nucleus | 49.0 | 98.0 |
| TraesCS6B01G410000.1 | Wheat | nucleus | 48.0 | 97.96 |
| TraesCS6D01G356300.1 | Wheat | nucleus | 48.0 | 97.96 |
| CDY21649 | Canola | mitochondrion, nucleus | 61.0 | 96.83 |
| VIT_09s0002g02640.t01 | Wine grape | mitochondrion, nucleus | 60.0 | 96.77 |
| Solyc12g008700.1.1 | Tomato | endoplasmic reticulum, unclear | 60.0 | 96.77 |
| Solyc08g076340.2.1 | Tomato | mitochondrion, nucleus | 60.0 | 96.77 |
| PGSC0003DMT400006164 | Potato | extracellular | 60.0 | 96.77 |
| PGSC0003DMT400000776 | Potato | mitochondrion, nucleus | 60.0 | 96.77 |
| Os06t0172600-00 | Rice | nucleus | 60.0 | 96.77 |
| Os02t0804100-01 | Rice | mitochondrion, nucleus | 60.0 | 96.77 |
| KRH57406 | Soybean | mitochondrion, nucleus | 60.0 | 96.77 |
| EES07706 | Sorghum | mitochondrion, nucleus | 60.0 | 96.77 |
| EER87936 | Sorghum | mitochondrion, nucleus | 60.0 | 96.77 |
| Zm00001d018410_P001 | Maize | plastid | 60.0 | 96.77 |
| Zm00001d037479_P001 | Maize | mitochondrion, nucleus | 60.0 | 96.77 |
| TraesCS6A01G372200.1 | Wheat | nucleus | 45.0 | 95.74 |
| TraesCS7B01G034200.1 | Wheat | golgi | 59.0 | 95.16 |
| Zm00001d045174_P001 | Maize | plastid | 59.0 | 95.16 |
| GSMUA_Achr6P35760_001 | Banana | cytosol | 23.0 | 92.0 |
| CDX82719 | Canola | cytosol, mitochondrion | 60.0 | 90.91 |
| CDY06811 | Canola | cytosol | 68.0 | 86.08 |
| VIT_11s0016g02690.t01 | Wine grape | cytosol, mitochondrion | 60.0 | 80.0 |
| CDX81943 | Canola | plastid | 60.0 | 78.95 |
| GSMUA_Achr4P08640_001 | Banana | nucleus | 32.0 | 76.19 |
| CDX88582 | Canola | nucleus, plastid | 63.0 | 73.26 |
| CDY35885 | Canola | cytosol | 60.0 | 71.43 |
| CDY32875 | Canola | nucleus, plastid | 64.0 | 69.57 |
| Zm00001d052003_P002 | Maize | plastid | 57.0 | 67.86 |
| HORVU7Hr1G027760.1 | Barley | plastid | 62.0 | 67.39 |
| CDY53992 | Canola | mitochondrion, plastid | 63.0 | 64.29 |
| CDY42211 | Canola | mitochondrion, plastid | 63.0 | 64.29 |
| CDY32767 | Canola | mitochondrion, plastid | 63.0 | 64.29 |
| KRH28081 | Soybean | cytosol, mitochondrion | 48.0 | 64.0 |
| CDY41797 | Canola | plastid | 64.0 | 58.72 |
| GSMUA_Achr4P00880_001 | Banana | nucleus | 58.0 | 57.43 |
| KRH77363 | Soybean | mitochondrion, nucleus | 59.0 | 56.73 |
| CDY20713 | Canola | nucleus | 64.0 | 54.7 |
Protein Annotations
| MapMan:17.1.3.1.32 | GO:A0A078I063 | UniProt:A0A078I063 | EnsemblPlants:CDY43497 | ProteinID:CDY43497 | ProteinID:CDY43497.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00076780001 | PFAM:PF04758 | PANTHER:PTHR12650 |
| PANTHER:PTHR12650:SF15 | InterPro:Ribosomal_S30 | UniParc:UPI0004EE527B | SEG:seg | : | : |
Description
BnaA01g07470D40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:A0A078I063]
Coordinates
chrLK032560:-:22590..23607
Molecular Weight (calculated)
11227.7 Da
IEP (calculated)
12.414
GRAVY (calculated)
-1.216
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: MGCTRRDRPH HLNIIHRRRE ENPSPFAGGS ADPFVKTTMG KVHGSLARAG KVRGQTPKVA KQDKKKKPRG RAHKRLQHNR RFVTAVVGFG KKRGPNSSEK
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK
Arabidopsis Description
RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.