CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56670.1	Thale cress	mitochondrion, nucleus	72.09	100.0
TraesCS7D01G132800.1	Wheat	nucleus	56.98	98.0
TraesCS6D01G356300.1	Wheat	nucleus	55.81	97.96
TraesCS6B01G410000.1	Wheat	nucleus	55.81	97.96
CDY21649	Canola	mitochondrion, nucleus	70.93	96.83
EER87936	Sorghum	mitochondrion, nucleus	69.77	96.77
PGSC0003DMT400006164	Potato	extracellular	69.77	96.77
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	69.77	96.77
Os06t0172600-00	Rice	nucleus	69.77	96.77
Os02t0804100-01	Rice	mitochondrion, nucleus	69.77	96.77
KRH57406	Soybean	mitochondrion, nucleus	69.77	96.77
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	69.77	96.77
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	69.77	96.77
Zm00001d018410_P001	Maize	plastid	69.77	96.77
EES07706	Sorghum	mitochondrion, nucleus	69.77	96.77
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	69.77	96.77
Zm00001d037479_P001	Maize	mitochondrion, nucleus	69.77	96.77
TraesCS6A01G372200.1	Wheat	nucleus	52.33	95.74
Zm00001d045174_P001	Maize	plastid	68.6	95.16
TraesCS7B01G034200.1	Wheat	golgi	68.6	95.16
GSMUA_Achr6P35760_001	Banana	cytosol	26.74	92.0
CDX82719	Canola	cytosol, mitochondrion	69.77	90.91
CDY06811	Canola	cytosol	75.58	82.28
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	69.77	80.0
CDY32875	Canola	nucleus, plastid	84.88	79.35
CDX81943	Canola	plastid	69.77	78.95
GSMUA_Achr4P08640_001	Banana	nucleus	37.21	76.19
CDY35885	Canola	cytosol	70.93	72.62
CDY53992	Canola	mitochondrion, plastid	82.56	72.45
CDY42211	Canola	mitochondrion, plastid	82.56	72.45
CDY32767	Canola	mitochondrion, plastid	82.56	72.45
Zm00001d052003_P002	Maize	plastid	67.44	69.05
CDY41797	Canola	plastid	82.56	65.14
HORVU7Hr1G027760.1	Barley	plastid	68.6	64.13
KRH28081	Soybean	cytosol, mitochondrion	55.81	64.0
CDY43497	Canola	nucleus	73.26	63.0
CDY20713	Canola	nucleus	79.07	58.12
GSMUA_Achr4P00880_001	Banana	nucleus	67.44	57.43
KRH77363	Soybean	mitochondrion, nucleus	68.6	56.73

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078DI27	EnsemblPlants:CDX88582	ProteinID:CDX88582	ProteinID:CDX88582.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00148615001	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30
UniParc:UPI0004EDE2B3	SEG:seg	:	:	:	:

Description

BnaA03g10670D

Coordinates

chrLK031856:-:26444..27280

Molecular Weight (calculated)

9789.2 Da

IEP (calculated)

12.999

GRAVY (calculated)

-1.247

Length

86 amino acids

Sequence
(BLAST)

1: MFFIIRPKKI SNRRKKKQRS KSAAMGKVHG SLARAGKVRG QTPKVAKQDK KKKPRGRAHK RLQHNRRFVT AVVGFGKKRG PNSSEK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.