CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56670.1	Thale cress	mitochondrion, nucleus	67.39	100.0
TraesCS7D01G132800.1	Wheat	nucleus	53.26	98.0
TraesCS6D01G356300.1	Wheat	nucleus	52.17	97.96
TraesCS6B01G410000.1	Wheat	nucleus	52.17	97.96
CDY21649	Canola	mitochondrion, nucleus	66.3	96.83
PGSC0003DMT400006164	Potato	extracellular	65.22	96.77
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	65.22	96.77
Os06t0172600-00	Rice	nucleus	65.22	96.77
Os02t0804100-01	Rice	mitochondrion, nucleus	65.22	96.77
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	65.22	96.77
KRH57406	Soybean	mitochondrion, nucleus	65.22	96.77
Zm00001d018410_P001	Maize	plastid	65.22	96.77
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	65.22	96.77
Zm00001d037479_P001	Maize	mitochondrion, nucleus	65.22	96.77
EES07706	Sorghum	mitochondrion, nucleus	65.22	96.77
EER87936	Sorghum	mitochondrion, nucleus	65.22	96.77
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	65.22	96.77
TraesCS6A01G372200.1	Wheat	nucleus	48.91	95.74
Zm00001d045174_P001	Maize	plastid	64.13	95.16
TraesCS7B01G034200.1	Wheat	golgi	64.13	95.16
GSMUA_Achr6P35760_001	Banana	cytosol	25.0	92.0
CDX82719	Canola	cytosol, mitochondrion	65.22	90.91
CDX88582	Canola	nucleus, plastid	79.35	84.88
CDY06811	Canola	cytosol	69.57	81.01
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	65.22	80.0
CDX81943	Canola	plastid	65.22	78.95
CDY53992	Canola	mitochondrion, plastid	82.61	77.55
CDY42211	Canola	mitochondrion, plastid	82.61	77.55
CDY32767	Canola	mitochondrion, plastid	82.61	77.55
GSMUA_Achr4P08640_001	Banana	nucleus	34.78	76.19
CDY35885	Canola	cytosol	65.22	71.43
CDY41797	Canola	plastid	82.61	69.72
Zm00001d052003_P002	Maize	plastid	61.96	67.86
HORVU7Hr1G027760.1	Barley	plastid	67.39	67.39
KRH28081	Soybean	cytosol, mitochondrion	52.17	64.0
CDY43497	Canola	nucleus	69.57	64.0
KRH77363	Soybean	mitochondrion, nucleus	66.3	58.65
CDY20713	Canola	nucleus	73.91	58.12
GSMUA_Achr4P00880_001	Banana	nucleus	63.04	57.43

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078H2N5	UniProt:A0A078H2N5	EnsemblPlants:CDY32875	ProteinID:CDY32875	ProteinID:CDY32875.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00053004001	PFAM:PF04758	PANTHER:PTHR12650
PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI0004EF13FA	SEG:seg	:	:

Description

BnaC09g33220D40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:A0A078H2N5]

Coordinates

chrLK032301:-:167309..168192

Molecular Weight (calculated)

10592.2 Da

IEP (calculated)

12.607

GRAVY (calculated)

-1.318

Length

92 amino acids

Sequence
(BLAST)

1: MKKFFKCKAQ HISFRSYCSR RKRKQRSKSA MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.