CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G19750.1	Thale cress	mitochondrion, nucleus	78.95	96.77
CDY21649	Canola	mitochondrion, nucleus	78.95	95.24
TraesCS7D01G132800.1	Wheat	nucleus	61.84	94.0
TraesCS6B01G410000.1	Wheat	nucleus	60.53	93.88
TraesCS6D01G356300.1	Wheat	nucleus	60.53	93.88
EER87936	Sorghum	mitochondrion, nucleus	76.32	93.55
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	76.32	93.55
PGSC0003DMT400006164	Potato	extracellular	76.32	93.55
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	76.32	93.55
Os06t0172600-00	Rice	nucleus	76.32	93.55
Os02t0804100-01	Rice	mitochondrion, nucleus	76.32	93.55
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	76.32	93.55
KRH57406	Soybean	mitochondrion, nucleus	76.32	93.55
EES07706	Sorghum	mitochondrion, nucleus	76.32	93.55
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	76.32	93.55
Zm00001d018410_P001	Maize	plastid	76.32	93.55
Zm00001d037479_P001	Maize	mitochondrion, nucleus	76.32	93.55
CDX82719	Canola	cytosol, mitochondrion	80.26	92.42
GSMUA_Achr6P35760_001	Banana	cytosol	30.26	92.0
TraesCS7B01G034200.1	Wheat	golgi	75.0	91.94
Zm00001d045174_P001	Maize	plastid	75.0	91.94
TraesCS6A01G372200.1	Wheat	nucleus	56.58	91.49
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	76.32	77.33
CDY06811	Canola	cytosol	80.26	77.22
GSMUA_Achr4P08640_001	Banana	nucleus	42.11	76.19
CDY35885	Canola	cytosol	81.58	73.81
Bra031096.1-P	Field mustard	cytosol, plastid	77.63	73.75
Zm00001d052003_P002	Maize	plastid	80.26	72.62
CDX88582	Canola	nucleus, plastid	78.95	69.77
CDY32875	Canola	nucleus, plastid	78.95	65.22
HORVU7Hr1G027760.1	Barley	plastid	75.0	61.96
KRH28081	Soybean	cytosol, mitochondrion	60.53	61.33
CDY53992	Canola	mitochondrion, plastid	77.63	60.2
CDY42211	Canola	mitochondrion, plastid	77.63	60.2
CDY32767	Canola	mitochondrion, plastid	77.63	60.2
CDY43497	Canola	nucleus	78.95	60.0
KRH77363	Soybean	mitochondrion, nucleus	77.63	56.73
CDY41797	Canola	plastid	78.95	55.05
GSMUA_Achr4P00880_001	Banana	nucleus	72.37	54.46
CDY20713	Canola	nucleus	80.26	52.14

Protein Annotations

MapMan:17.1.3.1.32	GO:A0A078D3S9	EnsemblPlants:CDX81943	ProteinID:CDX81943	ProteinID:CDX81943.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00136906001	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30
UniParc:UPI0004EEA44A	SEG:seg	:	:	:	:

Description

BnaC08g36580D

Coordinates

chrLK031826:+:1583502..1584733

Molecular Weight (calculated)

8525.4 Da

IEP (calculated)

12.703

GRAVY (calculated)

-1.054

Length

76 amino acids

Sequence
(BLAST)

1: MGDSLRHAVS FFFSSRKVHG SLARAGKVRG QTPKVAKQDK KKKPRGRAHK RLQHNRRFVT AVVGFGKKRG PNSSEK

Best Arabidopsis Sequence Match ( AT2G19750.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.