Factsheet for VIT_11s0016g02690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07706	Sorghum	mitochondrion, nucleus	82.67	100.0
Zm00001d037479_P001	Maize	mitochondrion, nucleus	82.67	100.0
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	82.67	100.0
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	82.67	100.0
PGSC0003DMT400006164	Potato	extracellular	82.67	100.0
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	82.67	100.0
Os02t0804100-01	Rice	mitochondrion, nucleus	82.67	100.0
GSMUA_Achr6P35760_001	Banana	cytosol	33.33	100.0
TraesCS7D01G132800.1	Wheat	nucleus	65.33	98.0
TraesCS6D01G356300.1	Wheat	nucleus	64.0	97.96
TraesCS6B01G410000.1	Wheat	nucleus	64.0	97.96
AT4G29390.1	Thale cress	mitochondrion, nucleus	80.0	96.77
AT5G56670.1	Thale cress	mitochondrion, nucleus	80.0	96.77
TraesCS7B01G034200.1	Wheat	golgi	80.0	96.77
AT2G19750.1	Thale cress	mitochondrion, nucleus	80.0	96.77
TraesCS6A01G372200.1	Wheat	nucleus	60.0	95.74
CDY21649	Canola	mitochondrion, nucleus	78.67	93.65
CDX82719	Canola	cytosol, mitochondrion	77.33	87.88
GSMUA_Achr4P08640_001	Banana	nucleus	45.33	80.95
CDX81943	Canola	plastid	77.33	76.32
CDY06811	Canola	cytosol	80.0	75.95
CDX88582	Canola	nucleus, plastid	80.0	69.77
CDY35885	Canola	cytosol	77.33	69.05
HORVU7Hr1G027760.1	Barley	plastid	80.0	65.22
CDY32875	Canola	nucleus, plastid	80.0	65.22
CDY53992	Canola	mitochondrion, plastid	78.67	60.2
CDY42211	Canola	mitochondrion, plastid	78.67	60.2
CDY32767	Canola	mitochondrion, plastid	78.67	60.2
CDY43497	Canola	nucleus	80.0	60.0
GSMUA_Achr4P00880_001	Banana	nucleus	76.0	56.44
CDY41797	Canola	plastid	80.0	55.05
CDY20713	Canola	nucleus	80.0	51.28

Protein Annotations

EntrezGene:100241142	wikigene:100241142	EntrezGene:100252467	wikigene:100252467	MapMan:17.1.3.1.32	ProteinID:CCB51469
ProteinID:CCB51469.1	ProteinID:CCB59366	ProteinID:CCB59366.1	UniProt:F6HGX1	EMBL:FN595756	EMBL:FN596494
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EntrezGene:LOC100241142	wikigene:LOC100241142	EntrezGene:LOC100252467
wikigene:LOC100252467	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30	UniParc:UPI00021087A0
ArrayExpress:VIT_11s0016g02690	EnsemblPlantsGene:VIT_11s0016g02690	EnsemblPlants:VIT_11s0016g02690.t01	RefSeq:XP_002283033	RefSeq:XP_002283033.1	SEG:seg

Description

40S ribosomal protein S30 [Source:UniProtKB/TrEMBL;Acc:F6HGX1]

Coordinates

chr11:+:2144129..2146050

Molecular Weight (calculated)

8515.5 Da

IEP (calculated)

11.907

GRAVY (calculated)

-1.420

Length

75 amino acids

Sequence
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRMQY NRRFVTAVVG FGKKRGPNSS EKARRENCKE EEKPI

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.