Factsheet for GSMUA_Achr6P35760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08640_001	Banana	nucleus	92.0	54.76
EES07706	Sorghum	mitochondrion, nucleus	100.0	40.32
Zm00001d045174_P001	Maize	plastid	100.0	40.32
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	100.0	40.32
Solyc12g008700.1.1	Tomato	endoplasmic reticulum, unclear	100.0	40.32
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	100.0	40.32
PGSC0003DMT400006164	Potato	extracellular	100.0	40.32
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	100.0	40.32
Os06t0172600-00	Rice	nucleus	100.0	40.32
Os02t0804100-01	Rice	mitochondrion, nucleus	100.0	40.32
EER87936	Sorghum	mitochondrion, nucleus	100.0	40.32
TraesCS7B01G034200.1	Wheat	golgi	96.0	38.71
AT4G29390.1	Thale cress	mitochondrion, nucleus	92.0	37.1
AT5G56670.1	Thale cress	mitochondrion, nucleus	92.0	37.1
AT2G19750.1	Thale cress	mitochondrion, nucleus	92.0	37.1
CDY21649	Canola	mitochondrion, nucleus	92.0	36.51
CDX82719	Canola	cytosol, mitochondrion	92.0	34.85
VIT_11s0016g02690.t01	Wine grape	cytosol, mitochondrion	100.0	33.33
TraesCS7D01G132800.1	Wheat	nucleus	64.0	32.0
TraesCS6D01G356300.1	Wheat	nucleus	60.0	30.61
TraesCS6B01G410000.1	Wheat	nucleus	60.0	30.61
CDX81943	Canola	plastid	92.0	30.26
TraesCS6A01G372200.1	Wheat	nucleus	56.0	29.79
CDY06811	Canola	cytosol	92.0	29.11
CDY35885	Canola	cytosol	92.0	27.38
CDX88582	Canola	nucleus, plastid	92.0	26.74
HORVU7Hr1G027760.1	Barley	plastid	96.0	26.09
CDY32875	Canola	nucleus, plastid	92.0	25.0
GSMUA_Achr4P00880_001	Banana	nucleus	96.0	23.76
CDY32767	Canola	mitochondrion, plastid	92.0	23.47
CDY53992	Canola	mitochondrion, plastid	92.0	23.47
CDY42211	Canola	mitochondrion, plastid	92.0	23.47
CDY43497	Canola	nucleus	92.0	23.0
CDY41797	Canola	plastid	92.0	21.1
CDY20713	Canola	nucleus	92.0	19.66
Bra039017.1-P	Field mustard	mitochondrion	40.0	10.31

Protein Annotations

EnsemblPlants:GSMUA_Achr6P35760_001	EnsemblPlants:GSMUA_Achr6T35760_001	EnsemblPlantsGene:GSMUA_Achr6G35760_001	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
InterPro:Ribosomal_S30	PFAM:PF04758	UniParc:UPI000296D678	UniProt:M0TD19	MapMan:35.2	:

Description

40S ribosomal protein S30 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35760_001]

Coordinates

chr6:-:33885875..33886416

Molecular Weight (calculated)

2857.5 Da

IEP (calculated)

11.668

GRAVY (calculated)

-0.948

Length

25 amino acids

Sequence
(BLAST)

1: MQYNRRFVTA VVGFGKKRGP NSSEK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.