Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G410000.1 | Wheat | nucleus | 97.87 | 93.88 |
| TraesCS6D01G356300.1 | Wheat | nucleus | 97.87 | 93.88 |
| TraesCS7D01G132800.1 | Wheat | nucleus | 97.87 | 92.0 |
| VIT_09s0002g02640.t01 | Wine grape | mitochondrion, nucleus | 95.74 | 72.58 |
| Os06t0172600-00 | Rice | nucleus | 95.74 | 72.58 |
| Os02t0804100-01 | Rice | mitochondrion, nucleus | 95.74 | 72.58 |
| PGSC0003DMT400000776 | Potato | mitochondrion, nucleus | 95.74 | 72.58 |
| KRH57406 | Soybean | mitochondrion, nucleus | 95.74 | 72.58 |
| PGSC0003DMT400006164 | Potato | extracellular | 95.74 | 72.58 |
| Solyc08g076340.2.1 | Tomato | mitochondrion, nucleus | 95.74 | 72.58 |
| Solyc12g008700.1.1 | Tomato | endoplasmic reticulum, unclear | 95.74 | 72.58 |
| EES07706 | Sorghum | mitochondrion, nucleus | 95.74 | 72.58 |
| EER87936 | Sorghum | mitochondrion, nucleus | 95.74 | 72.58 |
| Zm00001d018410_P001 | Maize | plastid | 95.74 | 72.58 |
| Zm00001d037479_P001 | Maize | mitochondrion, nucleus | 95.74 | 72.58 |
| Zm00001d045174_P001 | Maize | plastid | 95.74 | 72.58 |
| AT2G19750.1 | Thale cress | mitochondrion, nucleus | 95.74 | 72.58 |
| AT5G56670.1 | Thale cress | mitochondrion, nucleus | 95.74 | 72.58 |
| AT4G29390.1 | Thale cress | mitochondrion, nucleus | 95.74 | 72.58 |
| CDY21649 | Canola | mitochondrion, nucleus | 93.62 | 69.84 |
| CDX82719 | Canola | cytosol, mitochondrion | 91.49 | 65.15 |
| VIT_11s0016g02690.t01 | Wine grape | cytosol, mitochondrion | 95.74 | 60.0 |
| CDY06811 | Canola | cytosol | 95.74 | 56.96 |
| CDX81943 | Canola | plastid | 91.49 | 56.58 |
| GSMUA_Achr6P35760_001 | Banana | cytosol | 29.79 | 56.0 |
| CDX88582 | Canola | nucleus, plastid | 95.74 | 52.33 |
| Zm00001d052003_P002 | Maize | plastid | 91.49 | 51.19 |
| CDY35885 | Canola | cytosol | 91.49 | 51.19 |
| Bra031096.1-P | Field mustard | cytosol, plastid | 85.11 | 50.0 |
| CDY32875 | Canola | nucleus, plastid | 95.74 | 48.91 |
| KRH28081 | Soybean | cytosol, mitochondrion | 72.34 | 45.33 |
| GSMUA_Achr4P08640_001 | Banana | nucleus | 40.43 | 45.24 |
| CDY43497 | Canola | nucleus | 95.74 | 45.0 |
| CDY53992 | Canola | mitochondrion, plastid | 93.62 | 44.9 |
| CDY42211 | Canola | mitochondrion, plastid | 93.62 | 44.9 |
| CDY32767 | Canola | mitochondrion, plastid | 93.62 | 44.9 |
| KRH77363 | Soybean | mitochondrion, nucleus | 93.62 | 42.31 |
| GSMUA_Achr4P00880_001 | Banana | nucleus | 89.36 | 41.58 |
| CDY41797 | Canola | plastid | 95.74 | 41.28 |
| CDY20713 | Canola | nucleus | 95.74 | 38.46 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G372200.1 | EnsemblPlantsGene:TraesCS6A01G372200 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:Ribosomal_S30 | PANTHER:PTHR12650 |
| PANTHER:PTHR12650:SF15 | PFAM:PF04758 | MapMan:17.1.3.1.32 | : | : | : |
Description
No Description!
Coordinates
chr6A:-:596162585..596162871
Molecular Weight (calculated)
5029.2 Da
IEP (calculated)
12.216
GRAVY (calculated)
-1.230
Length
47 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKQP RGLVGFGKKR GPNSSEK
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK
Arabidopsis Description
RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.