CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037479_P001	Maize	mitochondrion, nucleus	100.0	100.0
VIT_09s0002g02640.t01	Wine grape	mitochondrion, nucleus	100.0	100.0
Solyc08g076340.2.1	Tomato	mitochondrion, nucleus	100.0	100.0
PGSC0003DMT400006164	Potato	extracellular	100.0	100.0
PGSC0003DMT400000776	Potato	mitochondrion, nucleus	100.0	100.0
Os02t0804100-01	Rice	mitochondrion, nucleus	100.0	100.0
EES07706	Sorghum	mitochondrion, nucleus	100.0	100.0
TraesCS7D01G132800.1	Wheat	nucleus	79.03	98.0
TraesCS6D01G356300.1	Wheat	nucleus	77.42	97.96
TraesCS6B01G410000.1	Wheat	nucleus	77.42	97.96
AT4G29390.1	Thale cress	mitochondrion, nucleus	96.77	96.77
TraesCS7B01G034200.1	Wheat	golgi	96.77	96.77
AT2G19750.1	Thale cress	mitochondrion, nucleus	96.77	96.77
AT5G56670.1	Thale cress	mitochondrion, nucleus	96.77	96.77
TraesCS6A01G372200.1	Wheat	nucleus	72.58	95.74
CDY21649	Canola	mitochondrion, nucleus	95.16	93.65
CDX82719	Canola	cytosol, mitochondrion	93.55	87.88
CDX81943	Canola	plastid	93.55	76.32
CDY06811	Canola	cytosol	96.77	75.95
CDX88582	Canola	nucleus, plastid	96.77	69.77
CDY35885	Canola	cytosol	93.55	69.05
KRH28081	Soybean	cytosol, mitochondrion	80.65	66.67
HORVU7Hr1G027760.1	Barley	plastid	96.77	65.22
CDY32875	Canola	nucleus, plastid	96.77	65.22
CDY32767	Canola	mitochondrion, plastid	95.16	60.2
CDY53992	Canola	mitochondrion, plastid	95.16	60.2
CDY42211	Canola	mitochondrion, plastid	95.16	60.2
CDY43497	Canola	nucleus	96.77	60.0
KRH77363	Soybean	mitochondrion, nucleus	98.39	58.65
CDY41797	Canola	plastid	96.77	55.05
CDY20713	Canola	nucleus	96.77	51.28

Protein Annotations

EntrezGene:100306279	EntrezGene:100803850	EntrezGene:100813601	MapMan:17.1.3.1.32	EMBL:ACUP02002832	EMBL:BT096067
UniProt:C6TEP1	EnsemblPlantsGene:GLYMA_05G059600	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlants:KRH57406
ProteinID:KRH57406	ProteinID:KRH57406.1	PFAM:PF04758	PANTHER:PTHR12650	PANTHER:PTHR12650:SF15	InterPro:Ribosomal_S30
UniParc:UPI0000375862	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:5566893..5567822

Molecular Weight (calculated)

6931.6 Da

IEP (calculated)

12.547

GRAVY (calculated)

-1.281

Length

62 amino acids

Sequence
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRMQY NRRFVTAVVG FGKKRGPNSS EK

Best Arabidopsis Sequence Match ( AT4G29390.1 )
(BLAST)

1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK

Arabidopsis Description

RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.