Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
18260611
nucleus: 23777608 extracellular: 24083427 nucleus: 26035336 plastid: 27992503 extracellular: 28232208 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
24083427
doi
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018410_P001 | Maize | plastid | 100.0 | 100.0 |
| Solyc12g008700.1.1 | Tomato | endoplasmic reticulum, unclear | 100.0 | 100.0 |
| Os02t0804100-01 | Rice | mitochondrion, nucleus | 100.0 | 100.0 |
| GSMUA_Achr6P35760_001 | Banana | cytosol | 40.32 | 100.0 |
| TraesCS7D01G132800.1 | Wheat | nucleus | 79.03 | 98.0 |
| TraesCS6D01G356300.1 | Wheat | nucleus | 77.42 | 97.96 |
| TraesCS6B01G410000.1 | Wheat | nucleus | 77.42 | 97.96 |
| AT4G29390.1 | Thale cress | mitochondrion, nucleus | 96.77 | 96.77 |
| TraesCS7B01G034200.1 | Wheat | golgi | 96.77 | 96.77 |
| AT2G19750.1 | Thale cress | mitochondrion, nucleus | 96.77 | 96.77 |
| AT5G56670.1 | Thale cress | mitochondrion, nucleus | 96.77 | 96.77 |
| TraesCS6A01G372200.1 | Wheat | nucleus | 72.58 | 95.74 |
| CDY21649 | Canola | mitochondrion, nucleus | 95.16 | 93.65 |
| CDX82719 | Canola | cytosol, mitochondrion | 93.55 | 87.88 |
| GSMUA_Achr4P08640_001 | Banana | nucleus | 54.84 | 80.95 |
| CDX81943 | Canola | plastid | 93.55 | 76.32 |
| CDY06811 | Canola | cytosol | 96.77 | 75.95 |
| CDX88582 | Canola | nucleus, plastid | 96.77 | 69.77 |
| CDY35885 | Canola | cytosol | 93.55 | 69.05 |
| KRH28081 | Soybean | cytosol, mitochondrion | 80.65 | 66.67 |
| CDY32875 | Canola | nucleus, plastid | 96.77 | 65.22 |
| HORVU7Hr1G027760.1 | Barley | plastid | 96.77 | 65.22 |
| CDY32767 | Canola | mitochondrion, plastid | 95.16 | 60.2 |
| CDY53992 | Canola | mitochondrion, plastid | 95.16 | 60.2 |
| CDY42211 | Canola | mitochondrion, plastid | 95.16 | 60.2 |
| CDY43497 | Canola | nucleus | 96.77 | 60.0 |
| GSMUA_Achr4P00880_001 | Banana | nucleus | 91.94 | 56.44 |
| CDY41797 | Canola | plastid | 96.77 | 55.05 |
| CDY20713 | Canola | nucleus | 96.77 | 51.28 |
| Bra039017.1-P | Field mustard | mitochondrion | 75.81 | 48.45 |
Protein Annotations
| MapMan:17.1.3.1.32 | EntrezGene:4340273 | EntrezGene:9272265 | ProteinID:BAD19414.1 | ProteinID:BAD36047.1 | ProteinID:BAD72277.1 |
| ProteinID:BAF18855.1 | ProteinID:BAS81446.1 | ProteinID:BAS96392.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:Os06g0172600 |
| EnsemblPlants:Os06t0172600-00 | PFAM:PF04758 | PANTHER:PTHR12650 | PANTHER:PTHR12650:SF15 | UniProt:Q6K853 | InterPro:Ribosomal_S30 |
| UniParc:UPI0000375862 | RefSeq:XP_015623731.1 | RefSeq:XP_015644441.1 | SEG:seg | : | : |
Description
Similar to predicted protein. (Os06t0172600-00)
Coordinates
chr6:+:3656494..3657055
Molecular Weight (calculated)
6931.6 Da
IEP (calculated)
12.547
GRAVY (calculated)
-1.281
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRMQY NRRFVTAVVG FGKKRGPNSS EK
1: MGKVHGSLAR AGKVRGQTPK VAKQDKKKKP RGRAHKRLQH NRRFVTAVVG FGKKRGPNSS EK
Arabidopsis Description
RPS30A40S ribosomal protein S30 [Source:UniProtKB/Swiss-Prot;Acc:P49689]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.