CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
mitochondrion 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039130.1-P	Field mustard	cytosol	100.0	100.0
CDY37535	Canola	cytosol	100.0	100.0
CDX74295	Canola	cytosol	98.95	98.95
CDX91951	Canola	cytosol	98.95	98.95
AT3G01290.1	Thale cress	cytosol	95.1	95.44
OQU91678	Sorghum	cytosol	29.72	80.95
PGSC0003DMT400017866	Potato	cytosol	80.42	79.31
TraesCS1A01G146000.1	Wheat	cytosol, extracellular	80.07	78.16
TraesCS1B01G164200.1	Wheat	cytosol, extracellular	79.72	77.82
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	63.29	76.37
CDY11650	Canola	cytosol	74.83	74.83
CDY38764	Canola	cytosol	74.83	74.83
CDY56083	Canola	cytosol	74.48	74.74
CDY64507	Canola	cytosol	74.48	74.74
HORVU1Hr1G038810.3	Barley	golgi	79.72	68.26
TraesCS1D01G144600.2	Wheat	golgi	79.72	68.26
CDY38872	Canola	cytosol	56.29	55.14
CDY32626	Canola	cytosol	56.29	55.14
CDY64099	Canola	cytosol, nucleus	24.13	30.4

Protein Annotations

EnsemblPlants:CDY49041	EnsemblPlantsGene:GSBRNA2T00092260001	Gene3D:3.30.479.30	GO:A0A078IGD1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	ProteinID:CDY37535.1	ProteinID:CDY49041
ProteinID:CDY49041.1	SEG:seg	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0002547768	UniProt:A0A078IGD1
MapMan:35.1	:	:	:	:	:

Description

BnaC05g48690DBnaA05g34000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGD1]

Coordinates

chrLK032808:-:1679..2946

Molecular Weight (calculated)

31531.1 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.086

Length

286 amino acids

Sequence
(BLAST)

001: MGNLLCCVLV KQSDVAIKER FGKFQKVLNP GLQFVPWVIG DYVAGHLTLR LQQLDVQCET KTKDNVFVTV VASIQYRVLV DKASDAFYRL SNPTSQIKAY
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAANEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG ASSKSSSVFI PHGPGAVADV AAQIRNGLLQ AHQTNA

Best Arabidopsis Sequence Match ( AT3G01290.1 )
(BLAST)

001: MGNLFCCVLV KQSDVAVKER FGKFQKVLNP GLQFVPWVIG DYVAGTLTLR LQQLDVQCET KTKDNVFVTV VASIQYRVLA DKASDAFYRL SNPTTQIKAY
101: VFDVIRACVP KLNLDDVFEQ KNEIAKSVEE ELDKAMTAYG YEILQTLIID IEPDQQVKRA MNEINAAARM RVAASEKAEA EKIIQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAGNVPGTSA KDVLDMVMMT QYFDTMRDIG ATSKSSAVFI PHGPGAVSDV AAQIRNGLLQ ANNAS

Arabidopsis Description

HIR3HIR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V7M0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.