Factsheet for PGSC0003DMT400017866

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	77.59	94.94
PGSC0003DMT400083045	Potato	cytosol	86.9	88.42
PGSC0003DMT400065192	Potato	cytosol	85.86	87.37
OQU91678	Sorghum	cytosol	30.0	82.86
PGSC0003DMT400005236	Potato	cytosol	81.38	82.52
TraesCS1B01G164200.1	Wheat	cytosol, extracellular	82.41	81.57
TraesCS1A01G146000.1	Wheat	cytosol, extracellular	82.41	81.57
AT3G01290.1	Thale cress	cytosol	79.31	80.7
Bra039130.1-P	Field mustard	cytosol	79.31	80.42
CDY37535	Canola	cytosol	79.31	80.42
CDY49041	Canola	cytosol	79.31	80.42
Bra001009.1-P	Field mustard	cytosol	78.97	80.07
CDX74295	Canola	cytosol	78.97	80.07
CDX91951	Canola	cytosol	78.97	80.07
PGSC0003DMT400002232	Potato	cytosol	70.34	75.0
TraesCS1D01G144600.2	Wheat	golgi	82.41	71.56
HORVU1Hr1G038810.3	Barley	golgi	82.07	71.26
PGSC0003DMT400079622	Potato	cytosol	55.86	55.86
PGSC0003DMT400070532	Potato	cytosol	56.21	55.82

Protein Annotations

EnsemblPlants:PGSC0003DMT400017866	EnsemblPlantsGene:PGSC0003DMG400006939	EntrezGene:102579788	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	PGSC:PGSC0003DMG400006939	RefSeq:XP_006357123.1
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000295DAAC	UniProt:M1A9M0	MapMan:35.1	:

Description

Hypersensitive-induced response protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006939]

Coordinates

chr2:-:26023981..26028539

Molecular Weight (calculated)

31835.2 Da

IEP (calculated)

5.060

GRAVY (calculated)

-0.070

Length

290 amino acids

Sequence
(BLAST)

001: MGNLFCCVQV DQSTVAIKER FGKFDDVLEP GCHFLPWCIG SQVAGYLTLR LQQLDVRCET KSKDNVFVTV VASIQYRALA DKATDAFYKL SNTRSQIQAY
101: VFDVIRASVP KLNLDDVFEQ KNQIAKAVED ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARL RVAANEKAEA EKIVQIKRAE GDAEAKYLAG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVLDMVLIT QYFDTMKEIG ASSKSSAVFI PHGPGAVSDI AGQIRQGLLQ GSAVEQQNLL

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.