Factsheet for PGSC0003DMT400079622

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007190.2.1	Tomato	cytosol, nucleus, plastid	99.31	99.31
PGSC0003DMT400070532	Potato	cytosol	92.41	91.78
KRH09235	Soybean	cytosol	87.59	86.99
KRH38733	Soybean	endoplasmic reticulum	87.24	86.64
VIT_16s0022g01690.t01	Wine grape	cytosol	84.48	84.78
AT5G51570.1	Thale cress	cytosol	84.83	84.25
Bra029166.1-P	Field mustard	cytosol	83.79	83.22
CDY32626	Canola	cytosol	83.45	82.88
CDY38872	Canola	cytosol	83.45	82.88
GSMUA_Achr1P16680_001	Banana	cytosol, extracellular	81.72	81.72
Os06t0136000-01	Rice	plasma membrane	79.66	80.21
EER89146	Sorghum	extracellular	78.97	79.51
Zm00001d036073_P002	Maize	plasma membrane	78.62	79.17
TraesCS7D01G069900.1	Wheat	extracellular	78.62	79.17
TraesCS7A01G074700.1	Wheat	extracellular	78.62	79.17
TraesCS4A01G372600.1	Wheat	golgi	78.62	79.17
HORVU7Hr1G017190.1	Barley	vacuole	78.62	79.17
PGSC0003DMT400005236	Potato	cytosol	57.24	58.04
PGSC0003DMT400083045	Potato	cytosol	56.9	57.89
PGSC0003DMT400065192	Potato	cytosol	56.55	57.54
PGSC0003DMT400017866	Potato	cytosol	55.86	55.86
PGSC0003DMT400002232	Potato	cytosol	50.0	53.31
Os06t0135000-01	Rice	extracellular	11.03	41.03

Protein Annotations

EnsemblPlants:PGSC0003DMT400079622	EnsemblPlantsGene:PGSC0003DMG400031006	EntrezGene:102580287	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
PANTHER:PTHR43327	PANTHER:PTHR43327:SF11	PFAM:PF01145	PGSC:PGSC0003DMG400031006	RefSeq:XP_006348068.1	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI00029534B8	UniProt:M1D258	MapMan:35.1	:

Description

Protein PPLZ12 [Source:PGSC_GENE;Acc:PGSC0003DMG400031006]

Coordinates

chr3:+:40768553..40773774

Molecular Weight (calculated)

32332.8 Da

IEP (calculated)

4.979

GRAVY (calculated)

-0.216

Length

290 amino acids

Sequence
(BLAST)

001: MGNVNCVFCG CIEQASVGVV EKWGRFDRLA EPGLNFWNPL AGECLTGTLS TRINSLDVKI ETKTKDNVFV QLLCSIQYRV IRQNADDAFY ELQNPTEQIQ
101: AYVFDVVRAH VPKMNLDELF EQKDEVAKAV LEELEKVMGA YGYNIEHILM VDIIPDASVR RAMNEINAAQ RMQLASVYKG EADKILQVKK AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSHKVEGT SAKEVMDLIM ITQYFDTIKD LGNSSKNTTV FIPHGPGHVR DIGDQIRNGL MEAASAKVTE

Best Arabidopsis Sequence Match ( AT5G51570.1 )
(BLAST)

001: MGNTYCILGG CIEQASVGVV ERWGRFEHIA EPGCHFFNPL AGQWLAGVLS TRIKSLDVKI ETKTKDNVFV QLVCSIQYRV VKASADDAFY ELQNPKEQIQ
101: AYVFDVVRAL VPMMTLDALF EQKGEVAKSV LEELEKVMGA YGYSIEHILM VDIIPDPSVR KAMNEINAAQ RLQLASVYKG EAEKILQVKR AEAEAEAKYL
201: GGVGVARQRQ AITDGLRENI LNFSDKVEGT SAKEVMDLIM ITQYFDTIRD LGNSSKNTTV FLPHGPGHVR DISDQIRNGM MEAAASTQVN DV

Arabidopsis Description

HIR4Hypersensitive-induced response protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHM7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.