Factsheet for PGSC0003DMT400065192

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113220.2.1	Tomato	nucleus	98.6	98.6
PGSC0003DMT400083045	Potato	cytosol	92.28	92.28
KRH03423	Soybean	cytosol	90.18	90.49
AT5G62740.1	Thale cress	cytosol	90.53	90.21
Bra029247.1-P	Field mustard	cytosol	90.53	89.9
Bra010119.1-P	Field mustard	cytosol	90.18	89.55
KRH56959	Soybean	cytosol, extracellular	87.72	88.03
Bra008363.1-P	Field mustard	cytosol	72.98	87.39
Os05t0591900-05	Rice	cytosol	88.07	87.15
KXG22672	Sorghum	cytosol	87.72	87.11
Bra010118.1-P	Field mustard	cytosol	87.02	86.41
PGSC0003DMT400017866	Potato	cytosol	87.37	85.86
PGSC0003DMT400005236	Potato	cytosol	85.96	85.66
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	85.61	85.61
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	83.86	83.28
TraesCS5A01G212000.1	Wheat	cytosol	83.86	83.28
TraesCS5A01G212100.1	Wheat	cytosol	83.16	82.58
TraesCS5B01G211700.1	Wheat	cytosol	82.81	82.23
TraesCS5D01G221800.1	Wheat	cytosol	82.81	82.23
VIT_17s0000g05680.t01	Wine grape	extracellular	89.47	78.22
HORVU5Hr1G062410.6	Barley	cytosol	83.16	78.22
PGSC0003DMT400002232	Potato	cytosol	71.93	75.37
TraesCS5D01G221900.1	Wheat	cytosol	83.86	74.92
GSMUA_Achr6P35910_001	Banana	cytosol	85.26	73.19
Zm00001d039173_P002	Maize	plastid	87.37	73.02
PGSC0003DMT400070532	Potato	cytosol	58.25	56.85
PGSC0003DMT400079622	Potato	cytosol	57.54	56.55
VIT_12s0034g00930.t01	Wine grape	mitochondrion	29.12	39.52
VIT_05s0020g03390.t01	Wine grape	extracellular	7.02	13.89

Protein Annotations

EntrezGene:102583071	Gene3D:3.30.479.30	MapMan:35.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
EMBL:JQ315228	UniProt:M1CDJ0	RefSeq:NP_001303833.1	PFAM:PF01145	EnsemblPlantsGene:PGSC0003DMG400025335	PGSC:PGSC0003DMG400025335
EnsemblPlants:PGSC0003DMT400065192	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000296A94D
RefSeq:XP_006367072.1	RefSeq:XP_006367073.1	RefSeq:XP_006367074.1	RefSeq:XP_015160697.1	:	:

Description

Hypersensitive-induced reaction protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025335]

Coordinates

chr3:-:53062164..53064681

Molecular Weight (calculated)

31305.7 Da

IEP (calculated)

6.052

GRAVY (calculated)

-0.078

Length

285 amino acids

Sequence
(BLAST)

001: MGNLFCCVQV DQSTVAIKEQ FGKYQDVLEP GCHCVPWFLG SQLAGHLSLR VQQLDVRCET KTKDNVFVNV VASIQYRAIA DKANEAFYKL SNTKGQIQAY
101: VFDVIRASVP KLILDNVFEQ KNEIAKAVEE ELEKAMSAYG YEIVQTLIVD IVPDEHVKRA MNEINAAARL RVAANEKAEA EKILQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVKDV AQQIRDGLLQ ASVGH

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.