Factsheet for Bra008363.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra035381.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	Bra035381.1-P	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010119.1-P	Field mustard	cytosol	96.64	80.14
Bra029247.1-P	Field mustard	cytosol	94.54	78.4
Bra010118.1-P	Field mustard	cytosol	92.86	77.0
AT5G62740.1	Thale cress	cytosol	92.02	76.57
PGSC0003DMT400083045	Potato	cytosol	88.24	73.68
Solyc03g113220.2.1	Tomato	nucleus	87.39	72.98
PGSC0003DMT400065192	Potato	cytosol	87.39	72.98
Os05t0591900-05	Rice	cytosol	87.82	72.57
KRH03423	Soybean	cytosol	86.55	72.54
KXG22672	Sorghum	cytosol	87.39	72.47
KRH56959	Soybean	cytosol, extracellular	84.45	70.77
Solyc06g071050.2.1	Tomato	nucleus	85.71	70.59
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	84.03	70.18
TraesCS5A01G212000.1	Wheat	cytosol	84.03	69.69
TraesCS5B01G211700.1	Wheat	cytosol	84.03	69.69
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	84.03	69.69
TraesCS5A01G212100.1	Wheat	cytosol	83.61	69.34
TraesCS5D01G221800.1	Wheat	cytosol	83.61	69.34
Bra016261.1-P	Field mustard	cytosol	82.35	68.53
Bra007885.1-P	Field mustard	cytosol	81.09	67.72
Bra001009.1-P	Field mustard	cytosol	78.57	65.38
HORVU5Hr1G062410.6	Barley	cytosol	83.19	65.35
Bra039130.1-P	Field mustard	cytosol	78.15	65.03
VIT_17s0000g05680.t01	Wine grape	extracellular	89.08	65.03
TraesCS5D01G221900.1	Wheat	cytosol	84.03	62.7
Zm00001d039173_P002	Maize	plastid	86.97	60.7
GSMUA_Achr6P35910_001	Banana	cytosol	83.19	59.64
Bra029166.1-P	Field mustard	cytosol	58.82	47.95
Bra029004.1-P	Field mustard	cytosol	21.01	34.97
VIT_12s0034g00930.t01	Wine grape	mitochondrion	20.17	22.86
VIT_05s0020g03390.t01	Wine grape	extracellular	5.46	9.03

Protein Annotations

EnsemblPlants:Bra008363.1	EnsemblPlants:Bra008363.1-P	EnsemblPlantsGene:Bra008363	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI00025464CB	UniProt:M4CVW6	MapMan:35.1	:	:	:

Description

AT5G62740 (E=1e-122) | band 7 family protein

Coordinates

chrA02:+:15052409..15053201

Molecular Weight (calculated)

26447.9 Da

IEP (calculated)

5.020

GRAVY (calculated)

-0.027

Length

238 amino acids

Sequence
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEEVLEP GCHFLPWCLG QQVAGYLSLR LQQLDVRCET KTKDNVFVNV VASIQYRALA NNANDAFYKL SNTRSQIQAY
101: VFDVIRASVP KLILDDVFEQ KNEIAKAVEE ELEKAMSAYG FEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA SLLCVKII

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.