CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 25724908

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH14106
KRH74010

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	KRH14106	AT5G35750.1	18642946
AT5G62740.1	KRH74010	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03423	Soybean	cytosol	96.13	96.13
PGSC0003DMT400083045	Potato	cytosol	88.73	88.42
Solyc03g113220.2.1	Tomato	nucleus	88.03	87.72
PGSC0003DMT400065192	Potato	cytosol	88.03	87.72
Bra029247.1-P	Field mustard	cytosol	87.68	86.76
AT5G62740.1	Thale cress	cytosol	87.32	86.71
Solyc06g071050.2.1	Tomato	nucleus	88.03	86.51
Bra010119.1-P	Field mustard	cytosol	87.32	86.41
KXG22672	Sorghum	cytosol	86.62	85.71
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	85.92	85.61
Os05t0591900-05	Rice	cytosol	86.27	85.07
Bra008363.1-P	Field mustard	cytosol	70.77	84.45
Bra010118.1-P	Field mustard	cytosol	84.86	83.97
TraesCS5A01G212000.1	Wheat	cytosol	82.39	81.53
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	82.39	81.53
TraesCS5A01G212100.1	Wheat	cytosol	82.04	81.18
TraesCS5B01G211700.1	Wheat	cytosol	81.69	80.84
TraesCS5D01G221800.1	Wheat	cytosol	81.69	80.84
KRG93497	Soybean	cytosol	80.99	80.42
KRH18505	Soybean	endoplasmic reticulum	80.28	79.72
KRH69355	Soybean	cytosol	79.58	79.02
KRG99161	Soybean	cytosol	78.17	77.62
HORVU5Hr1G062410.6	Barley	cytosol	82.39	77.23
KRH74781	Soybean	cytosol	77.11	76.57
KRH69350	Soybean	cytosol	77.11	75.78
KRH69356	Soybean	cytosol	76.41	75.61
TraesCS5D01G221900.1	Wheat	cytosol	82.39	73.35
Zm00001d039173_P002	Maize	plastid	86.62	72.14
KRH45847	Soybean	cytosol	14.79	58.33
KRH09235	Soybean	cytosol	59.15	57.53
KRH38733	Soybean	endoplasmic reticulum	58.8	57.19
VIT_12s0034g00930.t01	Wine grape	mitochondrion	28.87	39.05
KRH69353	Soybean	cytosol	19.01	38.85
VIT_05s0020g03390.t01	Wine grape	extracellular	6.34	12.5

Protein Annotations

EntrezGene:100789547	Gene3D:3.30.479.30	MapMan:35.1	EMBL:ACUP02002803	EMBL:BT097703	InterPro:Band_7
InterPro:Band_7/SPFH_dom_sf	UniProt:C6TJ60	EnsemblPlantsGene:GLYMA_05G029800	EnsemblPlants:KRH56959	ProteinID:KRH56959	ProteinID:KRH56959.1
ProteinID:KRH56960.1	PFAM:PF01145	PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	SMART:SM00244	SUPFAM:SSF117892
UniParc:UPI0001B16F5B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:2549902..2553647

Molecular Weight (calculated)

31369.8 Da

IEP (calculated)

7.020

GRAVY (calculated)

-0.120

Length

284 amino acids

Sequence
(BLAST)

001: MGNLFCCVKV DQSTVAMREG FGRFEKVLQP GCHCMPWFLG KQLAGHLSLR LQQLDLRCET KTKDNVFVNV VASIQYRALA EKANDAFYKL SNTKTQIQAY
101: VFDVIRASVP KLNLDDAFEQ KSEIARAVEE ELEKAMSAYG YEIVQTLIVD IDPDVHVKRA MNEINAAARL RLAANEKAEA EKILLIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTSA RDVMDMVLVT QYFDTMKDIG AASKSSAVFI PHGPGAVRDV ASQIRDGLLQ ASHQ

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.