Factsheet for Solyc06g071050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g047770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62740.1	Solyc07g047770.2.1	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083045	Potato	cytosol	95.5	96.84
Solyc03g113220.2.1	Tomato	nucleus	90.66	91.93
AT5G62740.1	Thale cress	cytosol	88.58	89.51
KRH03423	Soybean	cytosol	87.89	89.44
Bra029247.1-P	Field mustard	cytosol	87.89	88.5
KRH56959	Soybean	cytosol, extracellular	86.51	88.03
Bra010119.1-P	Field mustard	cytosol	87.2	87.8
Os05t0591900-05	Rice	cytosol	86.51	86.81
Bra008363.1-P	Field mustard	cytosol	70.59	85.71
KXG22672	Sorghum	cytosol	85.12	85.71
Bra010118.1-P	Field mustard	cytosol	84.78	85.37
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	84.08	85.26
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	83.74	84.32
TraesCS5A01G212000.1	Wheat	cytosol	83.74	84.32
TraesCS5A01G212100.1	Wheat	cytosol	83.05	83.62
Solyc02g067470.2.1	Tomato	endoplasmic reticulum, nucleus	68.51	83.54
TraesCS5B01G211700.1	Wheat	cytosol	82.7	83.28
TraesCS5D01G221800.1	Wheat	cytosol	82.7	83.28
HORVU5Hr1G062410.6	Barley	cytosol	83.74	79.87
VIT_17s0000g05680.t01	Wine grape	extracellular	89.97	79.75
Solyc03g058930.2.1	Tomato	cytosol, nucleus	28.37	76.64
TraesCS5D01G221900.1	Wheat	cytosol	83.74	75.86
Solyc01g010770.2.1	Tomato	cytosol	69.55	73.9
GSMUA_Achr6P35910_001	Banana	cytosol	84.78	73.8
Zm00001d039173_P002	Maize	plastid	84.78	71.85
Solyc03g058940.2.1	Tomato	cytosol	18.69	65.06
Solyc03g007190.2.1	Tomato	cytosol, nucleus, plastid	56.75	56.55
VIT_12s0034g00930.t01	Wine grape	mitochondrion	28.37	39.05
VIT_05s0020g03390.t01	Wine grape	extracellular	6.57	13.19

Protein Annotations

EnsemblPlants:Solyc06g071050.2.1	EnsemblPlantsGene:Solyc06g071050.2	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0002766F0B
UniProt:K4C8H8	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6:-:43653622..43656156

Molecular Weight (calculated)

31816.1 Da

IEP (calculated)

5.221

GRAVY (calculated)

-0.119

Length

289 amino acids

Sequence
(BLAST)

001: MGNLLGCVQV DQSTVAITEQ FGKYQDVLQP GCHCLPWCFG FQLAGHLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA DKANDAFYKL SNTKGQIQAY
101: VFDVIRASVP KLNLDDVFEQ KNEIAKAVED ELEKAMSAYG YEIVQTLIVD IEPDENVKRA MNEINAAARL RVAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTSA KDVMDMVLLT QYFDTMKEIG ASSKSSAVFL PHGPGAVRDV ASQIRDGLLQ ASCGYVWRV

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.