Factsheet for TraesCS5D01G221900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	89.97	100.0
TraesCS5A01G212000.1	Wheat	cytosol	89.97	100.0
TraesCS5D01G221800.1	Wheat	cytosol	89.03	98.95
HORVU5Hr1G062410.6	Barley	cytosol	89.34	94.06
Os05t0591900-05	Rice	cytosol	82.76	91.67
KXG22672	Sorghum	cytosol	81.82	90.94
Bra029247.1-P	Field mustard	cytosol	78.68	87.46
Bra010119.1-P	Field mustard	cytosol	78.37	87.11
AT5G62740.1	Thale cress	cytosol	77.74	86.71
PGSC0003DMT400083045	Potato	cytosol	77.12	86.32
Bra010118.1-P	Field mustard	cytosol	76.49	85.02
KRH03423	Soybean	cytosol	75.24	84.51
Bra008363.1-P	Field mustard	cytosol	62.7	84.03
PGSC0003DMT400065192	Potato	cytosol	74.92	83.86
Solyc06g071050.2.1	Tomato	nucleus	75.86	83.74
Solyc03g113220.2.1	Tomato	nucleus	74.61	83.51
KRH56959	Soybean	cytosol, extracellular	73.35	82.39
TraesCS5D01G195900.1	Wheat	cytosol	71.79	80.63
TraesCS4D01G322000.1	Wheat	cytosol	71.16	79.93
VIT_17s0000g05680.t01	Wine grape	extracellular	78.06	76.38
Zm00001d039173_P002	Maize	plastid	81.19	75.95
GSMUA_Achr6P35910_001	Banana	cytosol	75.55	72.59
TraesCS1D01G144600.2	Wheat	golgi	73.67	70.36
TraesCS7D01G069900.1	Wheat	extracellular	50.16	55.56
VIT_12s0034g00930.t01	Wine grape	mitochondrion	25.71	39.05
VIT_05s0020g03390.t01	Wine grape	extracellular	5.64	12.5

Protein Annotations

EnsemblPlants:TraesCS5D01G221900.1	EnsemblPlantsGene:TraesCS5D01G221900	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	PANTHER:PTHR43327
PANTHER:PTHR43327:SF6	PFAM:PF01145	SMART:SM00244	SUPFAM:SSF117892	TIGR:cd03407	MapMan:35.1

Description

No Description!

Coordinates

chr5D:-:329431389..329436653

Molecular Weight (calculated)

35196.4 Da

IEP (calculated)

6.257

GRAVY (calculated)

-0.074

Length

319 amino acids

Sequence
(BLAST)

001: MGNLCCCVQV DQSTVAIREQ FGKFDSVLEP GCHCLPWIFG KRVVGHLTLR LQQLDVRCET KTKDNVFVTV VASIQYRPLA GKESDAYYKL TNTRSQIQAY
101: VFDVIRASVP KLNLDDAFVQ KNDIAKAVED ELEKAMSAYG FEIVQTLIVD IEPDAHVKQA MNEINAGYLL KAWHDESWTL VLKSGLHRIT DMILVPFAAA
201: RMRVAANEKA EAEKIVQIKR AEGEAEAKYL SGLGIARQRQ AIVDGLRDSV LGFSVNVPGT TAKDVMDMVL ITQYFDTMKE IGASSKSSAV FIPHGPGAVR
301: DIATQIRDGL LQGQSASDN

Best Arabidopsis Sequence Match ( AT1G69840.3 )
(BLAST)

001: MGQALGCIQV DQSNVAIKET FGKFDEVLEP GCHCLPWCLG SQVAGHLSLR VQQLDVRCET KTKDNVFVTV VASIQYRALA ESAQDAFYKL SNTRNQIQAY
101: VFDVIRASVP KLDLDSTFEQ KNDIAKTVET ELEKAMSHYG YEIVQTLIVD IEPDVHVKRA MNEINAASRM REAASEKAEA EKILQIKRAE GEAESKYLSG
201: MGIARQRQAI VDGLRNSVLA FSESVPGTSS KDVMDMVLVT QYFDTLKEIG ASSKSNSVFI PHGPGAVRDI ASQIRDGLLQ GNSAAE

Arabidopsis Description

HIR2Hypersensitive-induced response protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.