CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0591900-05	Rice	cytosol	94.77	94.44
TraesCS5B01G211900.1	Wheat	cytosol, golgi, unclear	90.94	90.94
TraesCS5A01G212000.1	Wheat	cytosol	90.94	90.94
TraesCS5A01G212100.1	Wheat	cytosol	90.24	90.24
Bra029247.1-P	Field mustard	cytosol	89.9	89.9
TraesCS5D01G221800.1	Wheat	cytosol	89.9	89.9
TraesCS5B01G211700.1	Wheat	cytosol	89.9	89.9
Bra010119.1-P	Field mustard	cytosol	89.55	89.55
KRH03423	Soybean	cytosol	87.8	88.73
PGSC0003DMT400065192	Potato	cytosol	87.11	87.72
Bra010118.1-P	Field mustard	cytosol	87.46	87.46
AT5G62740.1	Thale cress	cytosol	87.11	87.41
Bra008363.1-P	Field mustard	cytosol	72.47	87.39
PGSC0003DMT400083045	Potato	cytosol	86.41	87.02
Solyc03g113220.2.1	Tomato	nucleus	86.41	87.02
KRH56959	Soybean	cytosol, extracellular	85.71	86.62
HORVU5Hr1G062410.6	Barley	cytosol	90.24	85.48
Solyc06g071050.2.1	Tomato	nucleus	85.71	85.12
Zm00001d039173_P002	Maize	plastid	97.56	82.11
TraesCS5D01G221900.1	Wheat	cytosol	90.94	81.82
EER96630	Sorghum	cytosol	80.49	81.34
OQU91678	Sorghum	cytosol	29.62	80.95
VIT_17s0000g05680.t01	Wine grape	extracellular	87.46	76.99
GSMUA_Achr6P35910_001	Banana	cytosol	86.41	74.7
EES03186	Sorghum	cytosol	68.64	66.78
EER89146	Sorghum	extracellular	59.58	59.38
KXG25127	Sorghum	mitochondrion	83.28	57.87
VIT_12s0034g00930.t01	Wine grape	mitochondrion	28.92	39.52
VIT_05s0020g03390.t01	Wine grape	extracellular	6.97	13.89

Protein Annotations

EnsemblPlants:KXG22672	EnsemblPlantsGene:SORBI_3009G255100	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	PFAM:PF01145	ProteinID:KXG22672	ProteinID:KXG22672.1	SEG:seg
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0001C804DD	UniProt:A0A1B6PAC3	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr9:-:58910532..58914835

Molecular Weight (calculated)

31506.8 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.131

Length

287 amino acids

Sequence
(BLAST)

001: MGNLCCCVQV DQSTVAIREQ FGKFDGVLEP GCHCMPWFVG KRVAGHLTLR LQQLDVRCET KTKDNVFVNV VASIQYRALA GKASDAFYKL SNTRSQIQAY
101: VFDVIRASVP KLHLDDAFEQ KDEIAKAVEE ELEKAMSAYG FEIVQTLIVD IEPDEHVKRA MNEINAAARL RAAANEKAEA EKIVQIKRAE GEAEAKYLSG
201: LGIARQRQAI VDGLRDSVLG FSVNVPGTTA KDVMDMVLIT QYFDTMKEIG ASSKASSVFI PHGPGAVRDI ATQIRDGLLQ GSSVTQH

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.