CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005648_P002	Maize	cytosol, mitochondrion, plasma membrane	96.48	96.48
Os09t0361200-01	Rice	plasma membrane	94.37	93.38
TraesCS5D01G195900.1	Wheat	cytosol	91.2	91.2
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	91.2	91.2
TraesCS5A01G193500.1	Wheat	cytosol	91.2	91.2
HORVU5Hr1G056950.4	Barley	cytosol	90.14	89.82
PGSC0003DMT400005236	Potato	cytosol	85.56	84.97
AT1G69840.3	Thale cress	cytosol	84.86	84.27
KRH69355	Soybean	cytosol	83.8	83.22
GSMUA_Achr6P35920_001	Banana	cytosol	83.1	82.81
KRG99161	Soybean	cytosol	82.75	82.17
KXG22672	Sorghum	cytosol	81.34	80.49
KRH74781	Soybean	cytosol	80.63	80.07
KRH69350	Soybean	cytosol	80.28	78.89
KRH69356	Soybean	cytosol	78.52	77.7
OQU91678	Sorghum	cytosol	27.46	74.29
PGSC0003DMT400002232	Potato	cytosol	71.13	74.26
KRH45847	Soybean	cytosol	17.25	68.06
EES03186	Sorghum	cytosol	70.42	67.8
VIT_01s0026g01640.t01	Wine grape	extracellular	84.15	64.08
KXG25127	Sorghum	mitochondrion	90.14	61.99
EER89146	Sorghum	extracellular	59.15	58.33
KRH69353	Soybean	cytosol	21.48	43.88

Protein Annotations

EnsemblPlants:EER96630	EnsemblPlantsGene:SORBI_3002G180100	EntrezGene:8055571	Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf
PANTHER:PTHR43327	PANTHER:PTHR43327:SF13	PFAM:PF01145	ProteinID:EER96630	ProteinID:EER96630.1	RefSeq:XP_002460109.1
SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI0001A839EC	UniProt:C5XAN5	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr2:+:56152410..56156176

Molecular Weight (calculated)

31346.6 Da

IEP (calculated)

4.980

GRAVY (calculated)

-0.155

Length

284 amino acids

Sequence
(BLAST)

001: MGQALGLVQV DQSTVAIKEN FGKFSEVLEP GCHFLPWCIG QQIAGYLSLR VRQLDVRCET KTKDNVFVTV VASVQYRALA EKASDAFYKL SNTREQIQSY
101: VFDVIRATVP KLDLDDAFEQ KNDIAKAVEE ELEKAMSMYG YEIVQTLIVD IEPDDRVKRA MNEINAAARM RVAASEKAEA EKILQIKKAE GEAESKYLAG
201: VGIARQRQAI VDGLRDSVLA FSENVPGTTA KDIMDMVLVT QYFDTMKEIG ASSKSSSVFI PHGPGAVKDV AAQIRDGLLQ AKLQ

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.