Factsheet for Zm00001d005648_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96630	Sorghum	cytosol	96.48	96.48
Os09t0361200-01	Rice	plasma membrane	93.66	92.68
TraesCS5D01G195900.1	Wheat	cytosol	90.14	90.14
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	90.14	90.14
TraesCS5A01G193500.1	Wheat	cytosol	90.14	90.14
HORVU5Hr1G056950.4	Barley	cytosol	88.73	88.42
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	89.44	85.52
PGSC0003DMT400005236	Potato	cytosol	84.86	84.27
KRH69355	Soybean	cytosol	83.1	82.52
AT1G69840.3	Thale cress	cytosol	82.75	82.17
GSMUA_Achr6P35920_001	Banana	cytosol	82.04	81.75
KRG99161	Soybean	cytosol	80.63	80.07
KRH74781	Soybean	cytosol	79.23	78.67
KRH69350	Soybean	cytosol	78.87	77.51
KRH69356	Soybean	cytosol	77.46	76.66
PGSC0003DMT400002232	Potato	cytosol	71.83	75.0
Zm00001d044323_P001	Maize	cytosol	29.23	68.03
Zm00001d039173_P002	Maize	plastid	80.63	67.16
KRH45847	Soybean	cytosol	16.9	66.67
Zm00001d003689_P001	Maize	cytosol	36.97	62.87
VIT_01s0026g01640.t01	Wine grape	extracellular	82.39	62.73
Zm00001d028839_P001	Maize	cytosol	23.94	61.82
Zm00001d036073_P002	Maize	plasma membrane	57.75	56.94
Zm00001d003131_P001	Maize	cytosol	24.3	53.91
KRH69353	Soybean	cytosol	21.48	43.88

Protein Annotations

EMBL:AF236374	EMBL:BT083877	EnsemblPlants:Zm00001d005648_P002	EnsemblPlants:Zm00001d005648_T002	EnsemblPlantsGene:Zm00001d005648	EntrezGene:541820
Gene3D:3.30.479.30	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil	PANTHER:PTHR43327	PANTHER:PTHR43327:SF13
PFAM:PF01145	ProteinID:ONM21606.1	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI000009FB69	UniProt:Q9M583
MapMan:35.1	:	:	:	:	:

Description

hypersensitive induced response2 hypersensitive induced response2

Coordinates

chr2:+:181902464..181904315

Molecular Weight (calculated)

31338.6 Da

IEP (calculated)

5.254

GRAVY (calculated)

-0.152

Length

284 amino acids

Sequence
(BLAST)

001: MGQILGLVQV DQSTVAIKEN FGKFSEVLEP GCHFLPWCIG QQIAGYLSLR VRQLDVRCET KTKDNVFVTV VASVQYRALA DKASDAFYKL SNTREQIQSY
101: VFDVIRATVP KLGLDDAFEQ KNEIAKAVEE ELEKAMSTYG YQIVQTLIVD IEPDDRVKRA MNEINAAARM RVAASEKAEA EKILQIKKAE GEAESKYLAG
201: VGIARQRQAI VDGLRDSVLA FSENVPGTTA KDIMDMVLVT QYFDTMREIG ASSKSSSVFI PHGPGAVKDV SAQIRDGLLQ ANLH

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.