Factsheet for GSMUA_Achr6P35920_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0398400-01	Rice	plasma membrane	85.26	85.56
HORVU2Hr1G012690.1	Barley	cytosol	70.88	84.17
TraesCS4B01G325100.1	Wheat	golgi	83.51	83.8
TraesCS4D01G322000.1	Wheat	cytosol	83.51	83.8
TraesCS5A01G497400.1	Wheat	cytosol	83.51	83.8
EER96630	Sorghum	cytosol	82.81	83.1
Os09t0361200-01	Rice	plasma membrane	83.16	82.58
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	85.96	82.49
TraesCS5A01G193500.1	Wheat	cytosol	82.11	82.39
TraesCS5B01G188800.1	Wheat	cytosol, golgi, unclear	82.11	82.39
TraesCS5D01G195900.1	Wheat	cytosol	82.11	82.39
AT1G69840.3	Thale cress	cytosol	82.46	82.17
PGSC0003DMT400005236	Potato	cytosol	82.46	82.17
HORVU5Hr1G056950.4	Barley	cytosol	82.11	82.11
Zm00001d005648_P002	Maize	cytosol, mitochondrion, plasma membrane	81.75	82.04
HORVU4Hr1G082240.6	Barley	cytosol	82.81	81.94
GSMUA_Achr7P23910_001	Banana	cytosol, plasma membrane	80.35	80.35
KRG99161	Soybean	cytosol	80.0	79.72
KRH69355	Soybean	cytosol	78.25	77.97
KRH69356	Soybean	cytosol	76.49	75.96
KRH69350	Soybean	cytosol	75.79	74.74
KRH74781	Soybean	cytosol	74.74	74.48
PGSC0003DMT400002232	Potato	cytosol	68.77	72.06
GSMUA_Achr6P35910_001	Banana	cytosol	80.7	69.28
KRH45847	Soybean	cytosol	16.84	66.67
VIT_01s0026g01640.t01	Wine grape	extracellular	81.75	62.47
Solyc03g058940.2.1	Tomato	cytosol	17.19	59.04
KXG25127	Sorghum	mitochondrion	85.26	58.84
GSMUA_Achr1P16680_001	Banana	cytosol, extracellular	55.44	54.48
KRH69353	Soybean	cytosol	20.35	41.73
Bra029004.1-P	Field mustard	cytosol	18.25	36.36
GSMUA_Achr8P26210_001	Banana	cytosol	32.63	34.19
CDY64099	Canola	cytosol, nucleus	23.16	29.07

Protein Annotations

Gene3D:3.30.479.30	MapMan:35.1	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005886	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020
GO:GO:0043424	EnsemblPlantsGene:GSMUA_Achr6G35920_001	EnsemblPlants:GSMUA_Achr6P35920_001	EnsemblPlants:GSMUA_Achr6T35920_001	UniProt:M0TD35	PFAM:PF01145
PANTHER:PTHR43327	PANTHER:PTHR43327:SF6	SMART:SM00244	SUPFAM:SSF117892	UniParc:UPI00029621D4	:

Description

Hypersensitive-induced response protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35920_001]

Coordinates

chr6:-:34032890..34036888

Molecular Weight (calculated)

31559.8 Da

IEP (calculated)

5.438

GRAVY (calculated)

-0.114

Length

285 amino acids

Sequence
(BLAST)

001: MGQAFCCIQV DQSTVAMRET FGKFDHVLEP GCHFLPWCLG KQIAGYLSLR VQQLDVRCET KTKDNVFVTV VASIQYNAIA DQASDAFYRL SNTKEQIQSY
101: VFDVIRASVP KLNLDDVFEQ KNDIARAVED ELGKAMSSYG YKIVQTLIVD IEPDNHVKKA MNEINAGKYR VAANEKAEAE KILQIKRAEG EAESKYLSGL
201: GIARQRQAIV DGLRDSVLAF SVNVPGTTAK DVMDMVLVTQ YFDTMKEIGA SSKSSSVFIP HGPGAVRDIA SQVRDGLLQE VILFC

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.