Factsheet for Bra029004.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g058940.2.1	Tomato	cytosol	27.97	48.19
HORVU2Hr1G012690.1	Barley	cytosol	41.96	25.0
Bra029247.1-P	Field mustard	cytosol	44.06	21.95
Bra010118.1-P	Field mustard	cytosol	43.36	21.6
Bra010119.1-P	Field mustard	cytosol	43.36	21.6
Bra008363.1-P	Field mustard	cytosol	34.97	21.01
HORVU4Hr1G082240.6	Barley	cytosol	41.96	20.83
TraesCS5A01G497400.1	Wheat	cytosol	41.26	20.77
TraesCS4D01G322000.1	Wheat	cytosol	41.26	20.77
TraesCS4B01G325100.1	Wheat	golgi	41.26	20.77
Os08t0398400-01	Rice	plasma membrane	41.26	20.77
PGSC0003DMT400005236	Potato	cytosol	40.56	20.28
Zm00001d050265_P001	Maize	cytosol, extracellular, mitochondrion, plasma membrane	41.96	20.2
Bra039130.1-P	Field mustard	cytosol	38.46	19.23
Bra001009.1-P	Field mustard	cytosol	38.46	19.23
Bra007885.1-P	Field mustard	cytosol	37.76	18.95
Bra016261.1-P	Field mustard	cytosol	37.76	18.88
GSMUA_Achr6P35920_001	Banana	cytosol	36.36	18.25
PGSC0003DMT400002232	Potato	cytosol	31.47	16.54
KXG25127	Sorghum	mitochondrion	41.96	14.53
Bra029166.1-P	Field mustard	cytosol	28.67	14.04

Protein Annotations

EnsemblPlants:Bra029004.1	EnsemblPlants:Bra029004.1-P	EnsemblPlantsGene:Bra029004	InterPro:Band_7	InterPro:Band_7/SPFH_dom_sf	ncoils:Coil
PANTHER:PTHR43327	PANTHER:PTHR43327:SF13	PFAM:PF01145	SEG:seg	SUPFAM:SSF117892	UniParc:UPI000253FEE5
UniProt:M4EJN8	MapMan:35.1	:	:	:	:

Description

AT5G62740 (E=7e-016) | band 7 family protein

Coordinates

chrA03:+:5821986..5824972

Molecular Weight (calculated)

16207.1 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.628

Length

143 amino acids

Sequence
(BLAST)

001: MAVRCPTCDN ASGDHIVFNL QQRSFSSFSF HQKKNEIAKA VEEELEKAMS AYGFEILQTL IVDTEPDEHV KQAMNQWKNK NRAIFDIPWD GPRRPVKIAV
101: RDWAAIFKTA SRTGQARRIP PEDEPAAVRD GTGRENPIDI PTV

Best Arabidopsis Sequence Match ( AT5G62740.1 )
(BLAST)

001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL

Arabidopsis Description

HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.