Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 23353019 mitochondrion: 27297264 |
msms PMID:
23353019
doi
University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0398400-01 | Rice | plasma membrane | 92.59 | 96.83 |
| HORVU2Hr1G012690.1 | Barley | cytosol | 73.74 | 91.25 |
| TraesCS5A01G497400.1 | Wheat | cytosol | 86.87 | 90.85 |
| TraesCS4D01G322000.1 | Wheat | cytosol | 86.87 | 90.85 |
| TraesCS4B01G325100.1 | Wheat | golgi | 86.87 | 90.85 |
| Zm00001d005648_P002 | Maize | cytosol, mitochondrion, plasma membrane | 85.52 | 89.44 |
| HORVU4Hr1G082240.6 | Barley | cytosol | 86.53 | 89.24 |
| GSMUA_Achr6P35920_001 | Banana | cytosol | 82.49 | 85.96 |
| PGSC0003DMT400005236 | Potato | cytosol | 82.15 | 85.31 |
| AT1G69840.3 | Thale cress | cytosol | 81.82 | 84.97 |
| KRH69355 | Soybean | cytosol | 80.13 | 83.22 |
| KRG99161 | Soybean | cytosol | 79.46 | 82.52 |
| KRH74781 | Soybean | cytosol | 75.76 | 78.67 |
| KRH69356 | Soybean | cytosol | 75.42 | 78.05 |
| KRH69350 | Soybean | cytosol | 75.76 | 77.85 |
| PGSC0003DMT400002232 | Potato | cytosol | 68.35 | 74.63 |
| KRH45847 | Soybean | cytosol | 17.17 | 70.83 |
| Zm00001d039173_P002 | Maize | plastid | 80.47 | 70.09 |
| KXG25127 | Sorghum | mitochondrion | 93.94 | 67.55 |
| Solyc03g058940.2.1 | Tomato | cytosol | 18.86 | 67.47 |
| Zm00001d044323_P001 | Maize | cytosol | 27.27 | 66.39 |
| VIT_01s0026g01640.t01 | Wine grape | extracellular | 82.49 | 65.68 |
| Zm00001d028839_P001 | Maize | cytosol | 23.57 | 63.64 |
| Zm00001d036073_P002 | Maize | plasma membrane | 56.57 | 58.33 |
| Zm00001d003689_P001 | Maize | cytosol | 32.32 | 57.48 |
| Zm00001d003131_P001 | Maize | cytosol | 23.91 | 55.47 |
| KRH69353 | Soybean | cytosol | 21.21 | 45.32 |
| Bra029004.1-P | Field mustard | cytosol | 20.2 | 41.96 |
| CDY64099 | Canola | cytosol, nucleus | 23.91 | 31.28 |
Protein Annotations
| EnsemblPlants:Zm00001d050265_P001 | EnsemblPlants:Zm00001d050265_T001 | EnsemblPlantsGene:Zm00001d050265 | Gene3D:3.30.479.30 | InterPro:Band_7 | InterPro:Band_7/SPFH_dom_sf |
| ncoils:Coil | PANTHER:PTHR43327 | PANTHER:PTHR43327:SF13 | PFAM:PF01145 | ProteinID:AQK52220.1 | ProteinID:AQK52221.1 |
| ProteinID:AQK52222.1 | SMART:SM00244 | SUPFAM:SSF117892 | UniParc:UPI00084580DA | UniProt:A0A1D6Q0Q2 | MapMan:35.1 |
Description
hypersensitive induced reaction1Hypersensitive-induced response protein 2
Coordinates
chr4:+:77232457..77236007
Molecular Weight (calculated)
32667.1 Da
IEP (calculated)
4.871
GRAVY (calculated)
-0.127
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQALGLIQV DQSTVAIKET FGKFDEVLEP GCHFLPWCIG KQIAGYLSLR VQQLDVRCET KTKDNVFVNV VASVQYRALA DKASDAFYRL SNTREQIQSY
101: VFDVIRASVP KMNLDDAFEQ KNEIAKAVEN ELEKAMSMYG YEIVQTLIVD IEPDEHVKRA MNEINAGNIS ELLLSVNGTA ARLRLAASEK AEAEKILQIK
201: RAEGDAESKY LAGLGIARQR QAIVDGLRDS VLAFSENVPG TSAKDVMDMV LVTQYFDTMK EIGASSKSSS VFIPHGPGAV RDIAAQIRDG QLQASLL
101: VFDVIRASVP KMNLDDAFEQ KNEIAKAVEN ELEKAMSMYG YEIVQTLIVD IEPDEHVKRA MNEINAGNIS ELLLSVNGTA ARLRLAASEK AEAEKILQIK
201: RAEGDAESKY LAGLGIARQR QAIVDGLRDS VLAFSENVPG TSAKDVMDMV LVTQYFDTMK EIGASSKSSS VFIPHGPGAV RDIAAQIRDG QLQASLL
001: MGNLFCCVQV DQSTVAIKET FGKFEDVLEP GCHFLPWCLG SQVAGYLSLR VQQLDVRCET KTKDNVFVNV VASIQYRALA NKANDAYYKL SNTRGQIQAY
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
101: VFDVIRASVP KLLLDDVFEQ KNDIAKAVEE ELEKAMSAYG YEIVQTLIVD IEPDEHVKRA MNEINAAARM RLAANEKAEA EKILQIKRAE GEAESKYLSG
201: LGIARQRQAI VDGLRDSVLG FAVNVPGTTA KDVMDMVLVT QYFDTMKEIG ASSKSSAVFI PHGPGAVRDV ASQIRDGLLQ GSSANL
Arabidopsis Description
HIR1HIR4 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.